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[bug#54088] [PATCH v2 01/19] gnu: julia-xyz: Adjust style using G-expres
|
From: |
zimoun |
|
Subject: |
[bug#54088] [PATCH v2 01/19] gnu: julia-xyz: Adjust style using G-expressions. |
|
Date: |
Wed, 23 Feb 2022 14:47:04 +0100 |
* gnu/packages/julia-xyz.scm: Adjust style using G-expressions.
---
gnu/packages/julia-xyz.scm | 1114 +++++++++++++++++++-----------------
1 file changed, 581 insertions(+), 533 deletions(-)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 4090d6d9c4..14c8c30751 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -139,7 +139,7 @@ (define-public julia-aqua
(base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
(build-system julia-build-system)
(arguments
- `(#:parallel-tests? #f))
+ (list #:parallel-tests? #f))
(home-page "https://github.com/JuliaTesting/Aqua.jl";)
(synopsis "Automated quality assurance for Julia packages")
(description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
@@ -165,7 +165,7 @@ (define-public julia-arrayinterface
;; Expression: @inferred(ArrayInterface.size(Rnr)) === (StaticInt(4),)
;; Evaluated: (static(2),) === (static(4),)
;; Disable as stopgap.
- `(#:tests? ,(not (target-x86-32?))))
+ (list #:tests? (not (target-x86-32?))))
(propagated-inputs
(list julia-ifelse
julia-requires
@@ -335,24 +335,25 @@ (define-public julia-benchmarktools
(base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-x86-32?)
- '((modify-phases %standard-phases
- (add-after 'unpack 'remove-failing-tests-i686
- (lambda _
- (substitute* "test/GroupsTests.jl"
- (("@test sprint\\(show, g1\\)")
- "@test_broken sprint(show, g1)")
- (("@test sprint\\(show, g1; context = :boundto => 1\\)")
- "@test_broken sprint(show, g1; context = :boundto => 1)")
- (("@test sprint\\(show, g1; context = :limit => false\\)")
- "@test_broken sprint(show, g1; context = :limit =>
false)")
- (("@test @test_deprecated") "@test_broken"))
- (substitute* "test/ExecutionTests.jl"
- ;; Evaluated: 12 == 8
- (("@test @ballocated\\(Ref\\(1\\)\\)")
- "@test_broken @ballocated(Ref(1))"))))))
- '(%standard-phases))))
+ (list
+ #:phases
+ (if (target-x86-32?)
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-failing-tests-i686
+ (lambda _
+ (substitute* "test/GroupsTests.jl"
+ (("@test sprint\\(show, g1\\)")
+ "@test_broken sprint(show, g1)")
+ (("@test sprint\\(show, g1; context = :boundto => 1\\)")
+ "@test_broken sprint(show, g1; context = :boundto => 1)")
+ (("@test sprint\\(show, g1; context = :limit => false\\)")
+ "@test_broken sprint(show, g1; context = :limit =>
false)")
+ (("@test @test_deprecated") "@test_broken"))
+ (substitute* "test/ExecutionTests.jl"
+ ;; Evaluated: 12 == 8
+ (("@test @ballocated\\(Ref\\(1\\)\\)")
+ "@test_broken @ballocated(Ref(1))")))))
+ #~%standard-phases)))
(propagated-inputs
(list julia-json))
(home-page "https://github.com/JuliaCI/BenchmarkTools.jl";)
@@ -405,15 +406,16 @@ (define-public julia-bioalignments
(base32 "1wf6qgsada59r2fykxfj9hcr635wl8maqxbd3w8qpa01k9glxa0k"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'skip-test
- (lambda _
- ;; Test fails because an unexpected type representation from
- ;; BioSequences. The aligned value is correct though.
- (substitute* "test/runtests.jl"
- (("@test sprint\\(show, aln\\)")
- "@test_broken sprint(show, aln)")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'skip-test
+ (lambda _
+ ;; Test fails because an unexpected type representation from
+ ;; BioSequences. The aligned value is correct though.
+ (substitute* "test/runtests.jl"
+ (("@test sprint\\(show, aln\\)")
+ "@test_broken sprint(show, aln)")))))))
(propagated-inputs
(list julia-biogenerics
julia-biosequences
@@ -498,13 +500,14 @@ (define-public julia-biosymbols
(base32 "1222rwdndi777lai8a6dwrh35i5rgmj75kcrhn8si72sxgz0syjm"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'adjust-tests
- (lambda _
- (substitute* "test/runtests.jl"
- (("\\@testset \\\"Range.*" all)
- (string-append all " return\n"))))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'adjust-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("\\@testset \\\"Range.*" all)
+ (string-append all " return\n"))))))))
(propagated-inputs
(list julia-automa))
(home-page "https://github.com/BioJulia/BioSymbols.jl";)
@@ -528,14 +531,15 @@ (define-public julia-blockarrays
(base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-64bit?)
- '(%standard-phases)
- '((modify-phases %standard-phases
- (add-after 'unpack 'fix-tests-int32-i686
- (lambda _
- (substitute* "test/test_blockarrays.jl"
- (("Int64") "Int32")))))))))
+ (list
+ #:phases
+ (if (target-64bit?)
+ #~%standard-phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests-int32-i686
+ (lambda _
+ (substitute* "test/test_blockarrays.jl"
+ (("Int64") "Int32"))))))))
(propagated-inputs
(list julia-arraylayouts
julia-fillarrays))
@@ -627,9 +631,10 @@ (define-public julia-bufferedstreams
;; freeze, see
;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
(arguments
- '(#:tests? #f
- #:julia-package-name "BufferedStreams"
- #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"))
+ (list
+ #:tests? #f
+ #:julia-package-name "BufferedStreams"
+ #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"))
(propagated-inputs
(list julia-compat))
(home-page "https://github.com/BioJulia/BufferedStreams.jl";)
@@ -815,14 +820,15 @@ (define-public julia-codeczlib
(base32 "0xm603nylkwk4bzx66zv1g3syzrvn3jh9spdx7kvcvgszzyrrgh4"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'reset-gzip-timestamps 'make-files-writable
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (for-each make-file-writable
- (find-files out "\\.gz$"))
- #t))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'reset-gzip-timestamps 'make-files-writable
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (for-each make-file-writable
+ (find-files out "\\.gz$"))
+ #t))))))
(propagated-inputs
(list julia-transcodingstreams
julia-zlib-jll))
@@ -1015,27 +1021,28 @@ (define-public julia-configurations
(base32 "1b23p0zk8dx2sf01cnw177mqci7qd81b9s32ixz9clsh0r0icl1b"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'fix-tests
- (lambda _
- (substitute* "test/runtests.jl"
- (("option.toml") "test/option.toml"))))
- (add-after 'link-depot 'dont-use-exproniconlite
- (lambda _
- (substitute* '("Project.toml"
- "src/Configurations.jl"
- "test/runtests.jl")
- (("ExproniconLite") "Expronicon"))
- (substitute* "Project.toml"
- (("55351af7-c7e9-48d6-89ff-24e801d99491")
- "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"))))
- ,@(if (target-64bit?)
- '()
- '((add-after 'unpack 'fix-tests-int32-i686
- (lambda _
- (substitute* "test/runtests.jl"
- (("Int64") "Int32")))))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'fix-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("option.toml") "test/option.toml"))))
+ (add-after 'link-depot 'dont-use-exproniconlite
+ (lambda _
+ (substitute* '("Project.toml"
+ "src/Configurations.jl"
+ "test/runtests.jl")
+ (("ExproniconLite") "Expronicon"))
+ (substitute* "Project.toml"
+ (("55351af7-c7e9-48d6-89ff-24e801d99491")
+ "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"))))
+ #$@(if (target-64bit?)
+ '()
+ '((add-after 'unpack 'fix-tests-int32-i686
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("Int64") "Int32")))))))))
(propagated-inputs
(list julia-crayons
julia-expronicon
@@ -1160,21 +1167,22 @@ (define-public julia-dataframes
(base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-failing-test
- (lambda _
- ;; Tests with non-standard colors.
- (substitute* "test/show.jl"
- (("test (sprint\\(show, df, context=:color=>true)" _ test)
- (string-append "test_nowarn " test)))
- (substitute* "test/io.jl"
- (("testset \\\"improved.*" all)
- (string-append all "return\n")))
- (substitute* "test/join.jl"
- (("test (levels\\(outerjoin\\(B)" _ test)
- (string-append "test_nowarn " test)))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-failing-test
+ (lambda _
+ ;; Tests with non-standard colors.
+ (substitute* "test/show.jl"
+ (("test (sprint\\(show, df, context=:color=>true)" _ test)
+ (string-append "test_nowarn " test)))
+ (substitute* "test/io.jl"
+ (("testset \\\"improved.*" all)
+ (string-append all "return\n")))
+ (substitute* "test/join.jl"
+ (("test (levels\\(outerjoin\\(B)" _ test)
+ (string-append "test_nowarn " test)))
+ #t)))))
(propagated-inputs
(list julia-dataapi
julia-invertedindices
@@ -1220,18 +1228,19 @@ (define-public julia-datastructures
julia-orderedcollections))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-x86-32?)
- '((modify-phases %standard-phases
- (add-after 'unpack 'remove-failing-test-i686
- (lambda _
- ;; The evaluation returns the correct value,
- ;; Evaluated: "Accumulator(1 => 3, 3 => 4)"
- ;; but, for some reasons, is considered as failed.
- (substitute* "test/test_accumulator.jl"
- (("@test sprint\\(show,Accumulator\\(1 => 3, 3 =>
4\\)\\)")
- "@test_broken sprint(show, Accumulator(1 => 3, 3 =>
4))"))))))
- '(%standard-phases))))
+ (list
+ #:phases
+ (if (target-x86-32?)
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-failing-test-i686
+ (lambda _
+ ;; The evaluation returns the correct value,
+ ;; Evaluated: "Accumulator(1 => 3, 3 => 4)"
+ ;; but, for some reasons, is considered as failed.
+ (substitute* "test/test_accumulator.jl"
+ (("@test sprint\\(show,Accumulator\\(1 => 3, 3 => 4\\)\\)")
+ "@test_broken sprint(show, Accumulator(1 => 3, 3 =>
4))")))))
+ #~%standard-phases)))
(home-page "https://github.com/JuliaCollections/DataStructures.jl";)
(synopsis "Julia module providing different data structures")
(description "This package implements a variety of data structures,
@@ -1275,17 +1284,18 @@ (define-public julia-datavalues
(base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f ; Tests need upgrading with newer Julia version.
- #:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-known-failing-tests
- (lambda _
- ;; See upstream report:
- ;; https://github.com/queryverse/DataValues.jl/issues/83
- (substitute* "test/array/test_reduce.jl"
- ((".*DataValue\\(mapreduce.*") "")
- ((".*DataValue\\(method\\(f.*") ""))
- #t)))))
+ (list
+ #:tests? #f ; Tests need upgrading with newer Julia version.
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-known-failing-tests
+ (lambda _
+ ;; See upstream report:
+ ;; https://github.com/queryverse/DataValues.jl/issues/83
+ (substitute* "test/array/test_reduce.jl"
+ ((".*DataValue\\(mapreduce.*") "")
+ ((".*DataValue\\(method\\(f.*") ""))
+ #t)))))
(propagated-inputs
(list julia-datavalueinterfaces))
(home-page "https://github.com/queryverse/DataValues.jl";)
@@ -1354,17 +1364,18 @@ (define-public julia-distances
(base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-flakey-tests
- (lambda _
- ;; Some combination of these tests fail nondeterministically
- ;; each of the times this package is built.
- (substitute* "test/test_dists.jl"
- (("test dyz ≥") "test_nowarn dyz ≥")
- (("test dist\\(y, x") "test_nowarn dist(y, x")
- (("test dist\\(z, x") "test_nowarn dist(z, x")
- (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-flakey-tests
+ (lambda _
+ ;; Some combination of these tests fail nondeterministically
+ ;; each of the times this package is built.
+ (substitute* "test/test_dists.jl"
+ (("test dyz ≥") "test_nowarn dyz ≥")
+ (("test dist\\(y, x") "test_nowarn dist(y, x")
+ (("test dist\\(z, x") "test_nowarn dist(z, x")
+ (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
(propagated-inputs
(list julia-statsapi))
(native-inputs
@@ -1393,7 +1404,7 @@ (define-public julia-docstringextensions
(base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Tests try to read SSL certificates.
+ (list #:tests? #f)) ; Tests try to read SSL certificates.
(home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/";)
(synopsis "Extensions for Julia's docsystem")
(description "This package provides a collection of useful extensions for
@@ -1420,22 +1431,23 @@ (define-public julia-documenter
(base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'patch-source
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "src/Deps.jl"
- (("pip install")
- (string-append (search-input-file inputs "bin/pip")
- " install")))))
- (add-after 'link-depot 'remove-javascript-downloads
- (lambda _
- (substitute* "src/Writers/HTMLWriter.jl"
- (("cdnjs.cloudflare.com") "example.com"))
- ;; Removing the javascript downloads causes these tests fail.
- (substitute* "test/examples/tests.jl"
- ((".*Main\\.examples_html_doc.*") "")
- ((".*Main\\.examples_html_mathjax3_doc.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'patch-source
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "src/Deps.jl"
+ (("pip install")
+ (string-append (search-input-file inputs "bin/pip")
+ " install")))))
+ (add-after 'link-depot 'remove-javascript-downloads
+ (lambda _
+ (substitute* "src/Writers/HTMLWriter.jl"
+ (("cdnjs.cloudflare.com") "example.com"))
+ ;; Removing the javascript downloads causes these tests fail.
+ (substitute* "test/examples/tests.jl"
+ ((".*Main\\.examples_html_doc.*") "")
+ ((".*Main\\.examples_html_mathjax3_doc.*") "")))))))
(propagated-inputs
(list julia-ansicoloredprinters
julia-docstringextensions
@@ -1505,7 +1517,7 @@ (define-public julia-documentertools
(base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Tests require network.
+ (list #:tests? #f)) ; Tests require network.
(inputs
;; We don't want to propagate the bootstrap version.
;; Cycle with Documenter.jl in later versions.
@@ -1604,13 +1616,14 @@ (define-public julia-dualnumbers
(base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'adjust-test-suite
- (lambda _
- (substitute* "test/runtests.jl"
- ;; Seems to not play nicely with SpecialFunctions
- ((".*isempty.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'adjust-test-suite
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ;; Seems to not play nicely with SpecialFunctions
+ ((".*isempty.*") "")))))))
(propagated-inputs
(list julia-calculus
julia-nanmath
@@ -1638,13 +1651,14 @@ (define-public julia-ellipsisnotation
(base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'adjust-test-suite
- (lambda _
- (substitute* "test/runtests.jl"
- ;; Seems to not play nicely with Julia-1.6.
- ((".*basic.jl.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'adjust-test-suite
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ;; Seems to not play nicely with Julia-1.6.
+ ((".*basic.jl.*") "")))))))
(propagated-inputs
(list julia-arrayinterface))
(home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl";)
@@ -1690,13 +1704,14 @@ (define-public julia-expronicon
(base32 "0h8aaynqlxrkn8575k5vqmhzil4vvxchhf0bcxa6zwawp558gj2y"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-network-tests
- (lambda _
- (substitute* "test/runtests.jl"
- ;; This test tries to access the Julia package registry.
- ((".*expand\\.jl.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-network-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ;; This test tries to access the Julia package registry.
+ ((".*expand\\.jl.*") "")))))))
(propagated-inputs
(list julia-mlstyle))
(native-inputs
@@ -1768,26 +1783,27 @@ (define-public julia-fileio
(base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (delete 'reset-gzip-timestamps)
- (add-after 'link-depot 'skip-network-tests
- (lambda _
- ;; These tests try to download audio/video files.
- (substitute* "test/query.jl"
- (("testset.*(MP4|OGG|MATROSKA).*" all)
- (string-append all "return\n")))
- (substitute* "test/loadsave.jl"
- (("testset.*CSVFiles.*" all)
- (string-append all "return\n")))
- ;; This test tries to download a Julia package.
- (substitute* "test/error_handling.jl"
- (("testset.*Not installed.*" all)
- (string-append all "return\n")))
- ;; This test tries to write to the store.
- ;; (Error says can't find User 0)
- (substitute* "test/runtests.jl"
- ((".*test_mimesave.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'reset-gzip-timestamps)
+ (add-after 'link-depot 'skip-network-tests
+ (lambda _
+ ;; These tests try to download audio/video files.
+ (substitute* "test/query.jl"
+ (("testset.*(MP4|OGG|MATROSKA).*" all)
+ (string-append all "return\n")))
+ (substitute* "test/loadsave.jl"
+ (("testset.*CSVFiles.*" all)
+ (string-append all "return\n")))
+ ;; This test tries to download a Julia package.
+ (substitute* "test/error_handling.jl"
+ (("testset.*Not installed.*" all)
+ (string-append all "return\n")))
+ ;; This test tries to write to the store.
+ ;; (Error says can't find User 0)
+ (substitute* "test/runtests.jl"
+ ((".*test_mimesave.*") "")))))))
(propagated-inputs
(list julia-requires))
(native-inputs
@@ -1818,7 +1834,7 @@ (define-public julia-filepathsbase
(base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with JLSO.jl
+ (list #:tests? #f)) ; Cycle with JLSO.jl
(home-page "https://github.com/rofinn/FilePathsBase.jl";)
(synopsis "Filesystem path types in Julia")
(description "@code{FilePathsBase.jl} provides a type based approach to
@@ -1864,14 +1880,15 @@ (define-public julia-finitediff
(base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'check 'pre-check
- (lambda _
- ;; We don't want to run all the tests; the Downstream tests
- ;; try to download the package registry.
- (setenv "GROUP" "Core")
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; We don't want to run all the tests; the Downstream tests
+ ;; try to download the package registry.
+ (setenv "GROUP" "Core")
+ #t)))))
(propagated-inputs
(list julia-arrayinterface
julia-requires
@@ -1903,16 +1920,17 @@ (define-public julia-finitedifferences
(base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-x86-32?)
- '((modify-phases %standard-phases
- (add-after 'unpack 'remove-failing-test-i686
- (lambda _
- ;; Machine Precision incorrectly handled
- (substitute* "test/methods.jl"
- (("@test central_fdm\\(15, 5, adapt=2\\)\\(exp, 1.0\\)")
- "@test_broken central_fdm(15, 5, adapt=2)(exp,
1.0)"))))))
- '(%standard-phases))))
+ (list
+ #:phases
+ (if (target-x86-32?)
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-failing-test-i686
+ (lambda _
+ ;; Machine Precision incorrectly handled
+ (substitute* "test/methods.jl"
+ (("@test central_fdm\\(15, 5, adapt=2\\)\\(exp, 1.0\\)")
+ "@test_broken central_fdm(15, 5, adapt=2)(exp, 1.0)")))))
+ #~%standard-phases)))
(inputs
(list julia-benchmarktools))
(propagated-inputs
@@ -1940,14 +1958,15 @@ (define-public julia-fixedpointnumbers
(base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'disable-failing-test
- (lambda* (#:key outputs #:allow-other-keys)
- (substitute* "test/fixed.jl"
- ;; A deprecation warning is not thrown
- (("@test_logs.*:warn" all) (string-append "# " all)))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'disable-failing-test
+ (lambda* (#:key outputs #:allow-other-keys)
+ (substitute* "test/fixed.jl"
+ ;; A deprecation warning is not thrown
+ (("@test_logs.*:warn" all) (string-append "# " all)))
+ #t)))))
(propagated-inputs
(list julia-compat))
(home-page "https://github.com/JuliaMath/FixedPointNumbers.jl";)
@@ -2000,7 +2019,7 @@ (define-public julia-forwarddiff
;; Expression: dual_isapprox(FDNUM ^ PRIMAL, exp(PRIMAL * log(FDNUM)))
;; ERROR: LoadError: LoadError: There was an error during testing
;; Disable as stopgap.
- `(#:tests? ,(not (target-x86-32?))))
+ (list #:tests? (not (target-x86-32?))))
(inputs ;required for tests
(list julia-calculus
julia-difftests))
@@ -2034,13 +2053,14 @@ (define-public julia-functionwrappers
(base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'adjust-tests
- (lambda _
- (substitute* "test/runtests.jl"
- (("testset \\\"Abstract.*" all)
- (string-append all "return\n"))))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'adjust-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("testset \\\"Abstract.*" all)
+ (string-append all "return\n"))))))))
(home-page "https://github.com/yuyichao/FunctionWrappers.jl";)
(synopsis "Type stable and efficient wrapper of arbitrary functions")
(description "This package provides a type stable and efficient wrapper of
@@ -2087,12 +2107,13 @@ (define-public julia-fuzzycompletions
(base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-failing-test
- (lambda _
- (substitute* "test/runtests.jl"
- ((".*RPLE.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-failing-test
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ((".*RPLE.*") "")))))))
(home-page "https://github.com/JunoLab/FuzzyCompletions.jl";)
(synopsis "Fuzzy completion provider for Julia")
(description
@@ -2114,12 +2135,13 @@ (define-public julia-genericlinearalgebra
(base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'adjust-test-suite
- (lambda _
- (substitute* "test/runtests.jl"
- ((".*lapack.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'adjust-test-suite
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ((".*lapack.*") "")))))))
(native-inputs
(list julia-quaternions))
(home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl";)
@@ -2145,20 +2167,21 @@ (define-public julia-genericschur
(base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'adjust-test-suite
- (lambda _
- (substitute* "test/complex.jl"
- ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
- (("A = _example") "#A = _example")
- (("schurtest\\(A,20\\)") ""))
- (substitute* "test/runtests.jl"
- ;; Test errors relating to liblapack.so
- ((".*complex\\.jl.*") "")
- ((".*real\\.jl.*") "")
- ;; GenericSVD is deprecated upstream
- ((".*gordschur\\.jl.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'adjust-test-suite
+ (lambda _
+ (substitute* "test/complex.jl"
+ ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
+ (("A = _example") "#A = _example")
+ (("schurtest\\(A,20\\)") ""))
+ (substitute* "test/runtests.jl"
+ ;; Test errors relating to liblapack.so
+ ((".*complex\\.jl.*") "")
+ ((".*real\\.jl.*") "")
+ ;; GenericSVD is deprecated upstream
+ ((".*gordschur\\.jl.*") "")))))))
(home-page "https://github.com/RalphAS/GenericSchur.jl";)
(synopsis "Schur decomposition of matrices with generic element types")
(description "The Schur decomposition is the workhorse for eigensystem
@@ -2182,24 +2205,25 @@ (define-public julia-geometrybasics
(base32 "057j3hjpli3q5b98cqkpi4p10x2k9pyksrz62hjmv1kb5qzdvhsj"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'remove-earcut
- (lambda _
- (substitute* '("Project.toml"
- "src/GeometryBasics.jl")
- ((".*EarCut.*") ""))))
- (add-after 'link-depot 'skip-incompatible-test
- (lambda _
- (substitute* "test/runtests.jl"
- (("@testset.*MetaT and heterogeneous data.*" all)
- (string-append all "return\n")))))
- ,@(if (target-64bit?)
- '()
- '((add-after 'unpack 'fix-tests-int32-i686
- (lambda _
- (substitute* "test/runtests.jl"
- (("Int64") "Int32")))))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'remove-earcut
+ (lambda _
+ (substitute* '("Project.toml"
+ "src/GeometryBasics.jl")
+ ((".*EarCut.*") ""))))
+ (add-after 'link-depot 'skip-incompatible-test
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("@testset.*MetaT and heterogeneous data.*" all)
+ (string-append all "return\n")))))
+ #$@(if (target-64bit?)
+ '()
+ '((add-after 'unpack 'fix-tests-int32-i686
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("Int64") "Int32")))))))))
(propagated-inputs
(list julia-itertools
julia-staticarrays
@@ -2325,35 +2349,36 @@ (define-public julia-http
(base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'install 'disable-network-tests
- (lambda _
- (substitute* "test/runtests.jl"
- (("\"async.jl") "# \"async.jl")
- (("\"client.jl") "# \"client.jl"))
- (substitute* "test/aws4.jl"
- (("@testset.*HTTP.request with AWS authentication.*" all)
- (string-append all "return\n")))
- (substitute* "test/insert_layers.jl"
- (("@testset.*Inserted final layer runs handler.*" all)
- (string-append all "return\n")))
- (substitute* "test/multipart.jl"
- (("@testset \"Setting of Content-Type.*" all)
- (string-append all "return\n"))
- (("@testset \"Deprecation of .*" all)
- (string-append all "return\n")))
- (substitute* "test/websockets.jl"
- (("@testset.*External Host.*" all)
- (string-append all "return\n")))
- (substitute* "test/messages.jl"
- (("@testset.*Read methods.*" all)
- (string-append all "return\n"))
- (("@testset.*Body - .*" all)
- (string-append all "return\n"))
- (("@testset.*Write to file.*" all)
- (string-append all "return\n")))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'disable-network-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("\"async.jl") "# \"async.jl")
+ (("\"client.jl") "# \"client.jl"))
+ (substitute* "test/aws4.jl"
+ (("@testset.*HTTP.request with AWS authentication.*" all)
+ (string-append all "return\n")))
+ (substitute* "test/insert_layers.jl"
+ (("@testset.*Inserted final layer runs handler.*" all)
+ (string-append all "return\n")))
+ (substitute* "test/multipart.jl"
+ (("@testset \"Setting of Content-Type.*" all)
+ (string-append all "return\n"))
+ (("@testset \"Deprecation of .*" all)
+ (string-append all "return\n")))
+ (substitute* "test/websockets.jl"
+ (("@testset.*External Host.*" all)
+ (string-append all "return\n")))
+ (substitute* "test/messages.jl"
+ (("@testset.*Read methods.*" all)
+ (string-append all "return\n"))
+ (("@testset.*Body - .*" all)
+ (string-append all "return\n"))
+ (("@testset.*Write to file.*" all)
+ (string-append all "return\n")))
+ #t)))))
(propagated-inputs
(list julia-inifile
julia-mbedtls
@@ -2457,7 +2482,7 @@ (define-public julia-imagebase
(base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with ImageMagick.jl.
+ (list #:tests? #f)) ; Cycle with ImageMagick.jl.
(propagated-inputs
(list julia-imagecore
julia-reexport))
@@ -2488,7 +2513,7 @@ (define-public julia-imagecore
(base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with ImageMagick.jl.
+ (list #:tests? #f)) ; Cycle with ImageMagick.jl.
(propagated-inputs
(list julia-abstractffts
julia-colors
@@ -2530,7 +2555,7 @@ (define-public julia-imageinterminal
(base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
+ (list #:tests? #f)) ; Cycle with ReferenceTests.jl.
(propagated-inputs
(list julia-crayons
julia-imagebase
@@ -2568,18 +2593,19 @@ (define-public julia-imagemagick
(base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-failing-test
- (lambda _
- ;; These tests try to download from the imagemagick.org
- (substitute* "test/runtests.jl"
- ((".*readremote\\.jl.*") ""))
- ;; Tests with the color gray are hard.
- (substitute* "test/constructed_images.jl"
- (("test (b == aa)" _ test) (string-append "test_nowarn " test))
- (("test (B == map)" _ test) (string-append "test_nowarn "
test)))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-failing-test
+ (lambda _
+ ;; These tests try to download from the imagemagick.org
+ (substitute* "test/runtests.jl"
+ ((".*readremote\\.jl.*") ""))
+ ;; Tests with the color gray are hard.
+ (substitute* "test/constructed_images.jl"
+ (("test (b == aa)" _ test) (string-append "test_nowarn " test))
+ (("test (B == map)" _ test) (string-append "test_nowarn "
test)))
+ #t)))))
(propagated-inputs
(list julia-fileio
julia-imagecore
@@ -2646,7 +2672,7 @@ (define-public julia-imageshow
(base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; cycle with ImageMagick.jl.
+ (list #:tests? #f)) ; cycle with ImageMagick.jl.
(propagated-inputs
(list julia-fileio
julia-imagebase
@@ -2681,7 +2707,7 @@ (define-public julia-imagetransformations
(base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with ImageMagick.jl.
+ (list #:tests? #f)) ; Cycle with ImageMagick.jl.
(propagated-inputs
(list julia-axisalgorithms
julia-colorvectorspace
@@ -2718,8 +2744,9 @@ (define-public julia-indexablebitvectors
(build-system julia-build-system)
;; Package without Project.toml
(arguments
- '(#:julia-package-name "IndexableBitVectors"
- #:julia-package-uuid "1cb3b9ac-1ffd-5777-9e6b-a3d42300664d"))
+ (list
+ #:julia-package-name "IndexableBitVectors"
+ #:julia-package-uuid "1cb3b9ac-1ffd-5777-9e6b-a3d42300664d"))
(home-page "https://github.com/BioJulia/IndexableBitVectors.jl";)
(synopsis "Bit vectors operations with extremely fast speed")
(description "This package exports following operations over bit vectors
@@ -2798,14 +2825,15 @@ (define-public julia-infinity
(base32 "1941lwvrdjnrynigzixxin3chpg1ba6xplvcwc89x0f6z658hwmm"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'remove-timezones.jl
- (lambda _
- (substitute* "test/runtests.jl"
- (("using TimeZones.*") "")
- ((".*infextendedtime.*") ""))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'remove-timezones.jl
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("using TimeZones.*") "")
+ ((".*infextendedtime.*") ""))
+ #t)))))
(propagated-inputs
(list julia-requires))
(native-inputs
@@ -2851,12 +2879,13 @@ (define-public julia-interpolations
(base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
(build-system julia-build-system)
(arguments
- `(#:parallel-tests? #f
- ;; XXXX: Unexpected failures for i686, e.g.,
- ;; Got exception outside of a @test
- ;; OverflowError: 96908232 * 106943408 overflowed for type Int32
- ;; Disable as stopgap.
- #:tests? ,(not (target-x86-32?))))
+ (list
+ #:parallel-tests? #f
+ ;; XXXX: Unexpected failures for i686, e.g.,
+ ;; Got exception outside of a @test
+ ;; OverflowError: 96908232 * 106943408 overflowed for type Int32
+ ;; Disable as stopgap.
+ #:tests? (not (target-x86-32?))))
(propagated-inputs
(list julia-axisalgorithms
julia-offsetarrays
@@ -2891,19 +2920,20 @@ (define-public julia-intervalsets
(base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-x86-32?)
- '((modify-phases %standard-phases
- (add-after 'unpack 'remove-failing-test-i686
- (lambda _
- (substitute* "test/runtests.jl"
- ;; For some reason, the output is correct but the test
- ;; is considered as failed:
- ;; Expression: duration(ClosedInterval(A, B)) ≡ 60
- ;; Evaluated: 60 ≡ 60
- (("@test duration\\(ClosedInterval")
- "@test_broken duration(ClosedInterval"))))))
- '(%standard-phases))))
+ (list
+ #:phases
+ (if (target-x86-32?)
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-failing-test-i686
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ;; For some reason, the output is correct but the test
+ ;; is considered as failed:
+ ;; Expression: duration(ClosedInterval(A, B)) ≡ 60
+ ;; Evaluated: 60 ≡ 60
+ (("@test duration\\(ClosedInterval")
+ "@test_broken duration(ClosedInterval")))))
+ #~%standard-phases)))
(propagated-inputs
(list julia-ellipsisnotation))
(native-inputs
@@ -3183,14 +3213,15 @@ (define-public julia-lazyarrays
(base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-64bit?)
- '(%standard-phases)
- '((modify-phases %standard-phases
- (add-after 'unpack 'fix-tests-int32-i686
- (lambda _
- (substitute* "test/multests.jl"
- (("Int64") "Int32")))))))))
+ (list
+ #:phases
+ (if (target-64bit?)
+ #~%standard-phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests-int32-i686
+ (lambda _
+ (substitute* "test/multests.jl"
+ (("Int64") "Int32"))))))))
(propagated-inputs
(list julia-arraylayouts
julia-fillarrays
@@ -3221,19 +3252,20 @@ (define-public julia-linesearches
(base32 "1qc4la07w6s1xhcyd0hvbnpr31zc1a2ssgyybc8biv5m00g0dnr0"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-optim-tests
- (lambda _
- (substitute* "test/examples.jl"
- ;; Prevent a cycle with Optim.jl.
- (("^ SKIPFILE.*") "")
- (("^ #SKIPFILE") " SKIPFILE"))))
- (add-after 'link-depot 'skip-doublefloats-tests
- (lambda _
- (substitute* "test/runtests.jl"
- (("using DoubleFloats.*") "")
- ((".*arbitrary_precision\\.jl.*") "")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-optim-tests
+ (lambda _
+ (substitute* "test/examples.jl"
+ ;; Prevent a cycle with Optim.jl.
+ (("^ SKIPFILE.*") "")
+ (("^ #SKIPFILE") " SKIPFILE"))))
+ (add-after 'link-depot 'skip-doublefloats-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("using DoubleFloats.*") "")
+ ((".*arbitrary_precision\\.jl.*") "")))))))
(propagated-inputs
(list julia-nlsolversbase
julia-nanmath
@@ -3311,14 +3343,15 @@ (define-public julia-mappedarrays
(base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-64bit?)
- '(%standard-phases)
- '((modify-phases %standard-phases
- (add-after 'unpack 'fix-tests-int32-i686
- (lambda _
- (substitute* "test/runtests.jl"
- (("Int64") "Int32")))))))))
+ (list
+ #:phases
+ (if (target-64bit?)
+ #~%standard-phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests-int32-i686
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("Int64") "Int32"))))))))
(propagated-inputs
(list julia-fixedpointnumbers))
(native-inputs
@@ -3350,16 +3383,17 @@ (define-public julia-matrixfactorizations
(base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-failing-test
- (lambda _
- ;; Tests with math functions are hard.
- (substitute* "test/test_ul.jl"
- (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
- ;; Also skip the REPL test.
- (("test String") "test_nowarn String"))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-failing-test
+ (lambda _
+ ;; Tests with math functions are hard.
+ (substitute* "test/test_ul.jl"
+ (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
+ ;; Also skip the REPL test.
+ (("test String") "test_nowarn String"))
+ #t)))))
(propagated-inputs
(list julia-arraylayouts))
(home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl";)
@@ -3385,14 +3419,15 @@ (define-public julia-mbedtls
(base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'install 'disable-network-tests
- ;; Tries to connect to httpbin.org
- (lambda _
- (substitute* "test/runtests.jl"
- (("testhost =") "return #"))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'disable-network-tests
+ ;; Tries to connect to httpbin.org
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("testhost =") "return #"))
+ #t)))))
(propagated-inputs
(list julia-mbedtls-jll))
(home-page "https://github.com/JuliaLang/MbedTLS.jl";)
@@ -3470,21 +3505,22 @@ (define-public julia-media
(build-system julia-build-system)
;; Package without Project.toml
(arguments
- '(#:julia-package-name "Media"
- #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27"
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'create-package-toml
- (lambda* (#:key julia-package-name julia-package-uuid
#:allow-other-keys)
- (with-output-to-file "Project.toml"
- (lambda _
- (format #t
- "name = \"~a\"~@
+ (list
+ #:julia-package-name "Media"
+ #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27"
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'create-package-toml
+ (lambda* (#:key julia-package-name julia-package-uuid
#:allow-other-keys)
+ (with-output-to-file "Project.toml"
+ (lambda _
+ (format #t
+ "name = \"~a\"~@
uuid = \"~a\"~@
[deps]~@
MacroTools =
\"1914dd2f-81c6-5fcd-8719-6d5c9610ff09\"~%"
- julia-package-name
- julia-package-uuid))))))))
+ julia-package-name
+ julia-package-uuid))))))))
(propagated-inputs
(list julia-macrotools))
(home-page "https://github.com/JunoLab/Media.jl";)
@@ -3599,7 +3635,7 @@ (define-public julia-mosaicviews
(base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with ImageCore.jl
+ (list #:tests? #f)) ; Cycle with ImageCore.jl
(propagated-inputs
(list julia-mappedarrays
julia-paddedviews
@@ -3651,21 +3687,22 @@ (define-public julia-mutablearithmetics
(base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-x86-32?)
- '((modify-phases %standard-phases
- (add-after 'unpack 'remove-failing-test-i686
- (lambda _
- (substitute* "test/utilities.jl"
- ;; Non-deterministic returned value, e.g.,
- ;; Expression: n == @allocated(f())
- ;; Evaluated: 240 == 120
- ;; and for some other values:
- ;; Got correct result, please change to @test
- ;; so @test_broken is not enough.
- (("@test n == @allocated f\\(\\)")
- " "))))))
- '(%standard-phases))))
+ (list
+ #:phases
+ (if (target-x86-32?)
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-failing-test-i686
+ (lambda _
+ (substitute* "test/utilities.jl"
+ ;; Non-deterministic returned value, e.g.,
+ ;; Expression: n == @allocated(f())
+ ;; Evaluated: 240 == 120
+ ;; and for some other values:
+ ;; Got correct result, please change to @test
+ ;; so @test_broken is not enough.
+ (("@test n == @allocated f\\(\\)")
+ " ")))))
+ #~%standard-phases)))
(propagated-inputs
(list julia-offsetarrays))
(home-page "https://github.com/jump-dev/MutableArithmetics.jl";)
@@ -3742,14 +3779,15 @@ (define-public julia-nnlib
(base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-cuda-tests
- (lambda _
- (substitute* "test/runtests.jl"
- (("using CUDA") "")
- (("&& CUDA\\.functional\\(\\)") ""))
- (setenv "NNLIB_TEST_CUDA" "false"))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-cuda-tests
+ (lambda _
+ (substitute* "test/runtests.jl"
+ (("using CUDA") "")
+ (("&& CUDA\\.functional\\(\\)") ""))
+ (setenv "NNLIB_TEST_CUDA" "false"))))))
(propagated-inputs
(list julia-adapt
julia-chainrulescore
@@ -3827,8 +3865,9 @@ (define-public julia-optimtestproblems
(base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
(build-system julia-build-system)
(arguments
- `(#:julia-package-name "OptimTestProblems"
- #:julia-package-uuid "cec144fc-5a64-5bc6-99fb-dde8f63e154c"))
+ (list
+ #:julia-package-name "OptimTestProblems"
+ #:julia-package-uuid "cec144fc-5a64-5bc6-99fb-dde8f63e154c"))
(home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl";)
(synopsis "Collection of optimization test problems")
(description "The purpose of this package is to provide test problems for
@@ -3874,7 +3913,7 @@ (define-public julia-offsetarrays
(propagated-inputs
(list julia-adapt))
;; CatIndices depends on OffsetArrays, introducing a recursive dependency
- (arguments '(#:tests? #f))
+ (arguments (list #:tests? #f))
(home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/";)
(synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
(description "@code{OffsetArrays.jl} provides Julia users with arrays that
@@ -4091,7 +4130,7 @@ (define-public julia-preferences
(base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Tests try to mkdir /.julia
+ (list #:tests? #f)) ; Tests try to mkdir /.julia
(home-page "https://github.com/JuliaPackaging/Preferences.jl";)
(synopsis "Store configuration switches to TOML files")
(description "The @code{Preferences} package provides an integrated way for
@@ -4116,13 +4155,14 @@ (define-public julia-prettytables
(base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-color-tests
- (lambda _
- (substitute* "test/text_backend.jl"
- ((".*colors\\.jl.*") ""))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-color-tests
+ (lambda _
+ (substitute* "test/text_backend.jl"
+ ((".*colors\\.jl.*") ""))
+ #t)))))
(propagated-inputs
(list julia-crayons
julia-formatting
@@ -4150,49 +4190,50 @@ (define-public julia-pycall
"1fj5d1ihnhnm0pl4hbx6hcd2bpdyhm8jiaqah2axsbd069j70saf"))))
(build-system julia-build-system)
(arguments
- `(#:imported-modules ((guix build python-build-system)
+ (list
+ #:imported-modules `((guix build python-build-system)
,@%julia-build-system-modules)
- #:modules ((guix build julia-build-system)
+ #:modules '((guix build julia-build-system)
(guix build utils)
((guix build python-build-system) #:prefix python:))
- #:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'remove-conda
- (lambda _
- (substitute* "Project.toml"
- ((".*Conda.*") ""))
- (substitute* (list "src/PyCall.jl"
- "test/runtests.jl")
- (("import Conda") ""))
- (substitute* "deps/depsutils.jl"
- (("Conda.PYTHONDIR") "\"/\""))
- #t))
- (add-after 'link-depot 'set-python
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((python (assoc-ref inputs "python")))
- (setenv "PYCALL_JL_RUNTIME_PYTHON"
- (string-append python "/bin/python3"))
- (with-output-to-file "deps/deps.jl"
- (lambda _
- (format #t
- "const python = \"~a/bin/python3\"~@
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'remove-conda
+ (lambda _
+ (substitute* "Project.toml"
+ ((".*Conda.*") ""))
+ (substitute* (list "src/PyCall.jl"
+ "test/runtests.jl")
+ (("import Conda") ""))
+ (substitute* "deps/depsutils.jl"
+ (("Conda.PYTHONDIR") "\"/\""))
+ #t))
+ (add-after 'link-depot 'set-python
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((python (assoc-ref inputs "python")))
+ (setenv "PYCALL_JL_RUNTIME_PYTHON"
+ (string-append python "/bin/python3"))
+ (with-output-to-file "deps/deps.jl"
+ (lambda _
+ (format #t
+ "const python = \"~a/bin/python3\"~@
const pyprogramname = \"~a/bin/python3\"~@
const libpython = \"~a/lib/libpython~a.so.1.0\"~@
const PYTHONHOME = \"~a\"~@
const pyversion_build = v\"~a\"~@
const conda = false~%"
- python
- python
- python
- (python:python-version python)
- python
- ,(package-version python))))
- #t)))
- (add-before 'check 'pre-check
- (lambda _
- (setenv "CI" "true")
- (setenv "JULIA_PKGEVAL" "true")
- #t)))))
+ python
+ python
+ python
+ (python:python-version python)
+ python
+ #$(package-version python))))
+ #t)))
+ (add-before 'check 'pre-check
+ (lambda _
+ (setenv "CI" "true")
+ (setenv "JULIA_PKGEVAL" "true")
+ #t)))))
(propagated-inputs
(list julia-macrotools
julia-versionparsing))
@@ -4278,15 +4319,16 @@ (define-public julia-quadmath
(base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'hardcode-libmath-location
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((gcclib (assoc-ref inputs "gcc:lib")))
- (substitute* "src/Quadmath.jl"
- (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
- (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
- #t))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'hardcode-libmath-location
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((gcclib (assoc-ref inputs "gcc:lib")))
+ (substitute* "src/Quadmath.jl"
+ (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
+ (("libquadmath.so.0" lib) (string-append gcclib "/lib/"
lib)))
+ #t))))))
(propagated-inputs
(list julia-requires))
(inputs
@@ -4427,7 +4469,7 @@ (define-public julia-recipespipeline
(base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with Plots.jl.
+ (list #:tests? #f)) ; Cycle with Plots.jl.
(propagated-inputs
(list julia-nanmath
julia-plotutils
@@ -4457,7 +4499,7 @@ (define-public julia-recursivearraytools
(base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
+ (list #:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
(propagated-inputs
(list julia-arrayinterface
julia-chainrulescore
@@ -4512,7 +4554,7 @@ (define-public julia-referencetests
(base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
+ (list #:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
(propagated-inputs
(list julia-deepdiffs
julia-distances
@@ -4550,7 +4592,7 @@ (define-public julia-requires
(base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
(build-system julia-build-system)
(arguments
- `(#:parallel-tests? #f))
+ (list #:parallel-tests? #f))
(inputs ;required for test
(list julia-example))
(propagated-inputs
@@ -4582,7 +4624,7 @@ (define-public julia-reversediff
;; Expression: hash(tr_float, hash(1)) === hash(v_float, hash(1))
;; MethodError: no method matching
decompose(::ReverseDiff.TrackedReal{Float64, Float64, Nothing})
;; Disable as stopgap.
- `(#:tests? ,(not (target-x86-32?))))
+ (list #:tests? (not (target-x86-32?))))
(propagated-inputs
(list julia-diffresults
julia-diffrules
@@ -4680,8 +4722,9 @@ (define-public julia-safetestsets
(base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
(build-system julia-build-system)
(arguments
- `(#:julia-package-name "SafeTestsets"
- #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"))
+ (list
+ #:julia-package-name "SafeTestsets"
+ #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"))
(native-inputs
(list julia-staticarrays))
(home-page "https://github.com/YingboMa/SafeTestsets.jl";)
@@ -4751,7 +4794,7 @@ (define-public julia-scratch
"09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Test suite tries to access the Julia package
registry.
+ (list #:tests? #f)) ; Test suite tries to access the Julia package
registry.
(home-page "https://github.com/JuliaPackaging/Scratch.jl";)
(synopsis "Scratch spaces for all your persistent mutable data needs")
(description "This repository implements the scratch spaces API for
@@ -4872,7 +4915,7 @@ (define-public julia-sortingalgorithms
(base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; cycle with StatsBase.jl
+ (list #:tests? #f)) ; cycle with StatsBase.jl
(propagated-inputs
(list julia-datastructures))
;(native-inputs
@@ -4976,13 +5019,14 @@ (define-public julia-stackviews
(base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'link-depot 'skip-doctest
- (lambda _
- (substitute* "test/runtests.jl"
- ((".*doctest.*") ""))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'skip-doctest
+ (lambda _
+ (substitute* "test/runtests.jl"
+ ((".*doctest.*") ""))
+ #t)))))
(propagated-inputs
(list julia-offsetarrays))
(native-inputs
@@ -5141,14 +5185,15 @@ (define-public julia-stringencodings
(base32 "1qwc5ll68ng80b5921ww6fvifxbsmiylakfgsbsjbzg7lzyb5i67"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'skip-failing-test
- (lambda _
- ;; https://github.com/JuliaStrings/StringEncodings.jl/issues/49
- (substitute* "test/runtests.jl"
- (("\"SHIFT_JIS\", \"SHIFT_JISX0213\"")
- " ")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'skip-failing-test
+ (lambda _
+ ;; https://github.com/JuliaStrings/StringEncodings.jl/issues/49
+ (substitute* "test/runtests.jl"
+ (("\"SHIFT_JIS\", \"SHIFT_JISX0213\"")
+ " ")))))))
(propagated-inputs
(list julia-libiconv-jll))
(home-page "https://github.com/JuliaStrings/StringEncodings.jl";)
@@ -5173,15 +5218,16 @@ (define-public julia-structarrays
(base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-64bit?)
- '(%standard-phases)
- '((modify-phases %standard-phases
- (add-after 'unpack 'fix-tests-int32-i686
- (lambda _
- (substitute* '("src/utils.jl"
- "test/runtests.jl")
- (("Int64") "Int32")))))))))
+ (list
+ #:phases
+ (if (target-64bit?)
+ #~%standard-phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests-int32-i686
+ (lambda _
+ (substitute* '("src/utils.jl"
+ "test/runtests.jl")
+ (("Int64") "Int32"))))))))
(propagated-inputs
(list julia-dataapi
julia-staticarrays
@@ -5379,7 +5425,7 @@ (define-public julia-testimages
(base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; cycle with ImageMagick.jl
+ (list #:tests? #f)) ; cycle with ImageMagick.jl
(propagated-inputs
(list julia-axisarrays
julia-colortypes
@@ -5448,7 +5494,7 @@ (define-public julia-transcodingstreams
(base32 "1w3klii293caqiclfh28jggv7f53xclm9fr6xmw38brwrn1hjb48"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ; Circular dependency with various codecs.
+ (list #:tests? #f)) ; Circular dependency with various
codecs.
(home-page "https://github.com/JuliaIO/TranscodingStreams.jl";)
(synopsis "Fast I/O transcoding data streams")
(description "This package provides tools for transcoding data streams
@@ -5543,17 +5589,18 @@ (define-public julia-uris
(base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
(build-system julia-build-system)
(arguments
- '(#:julia-package-name "URIs" ;required to run tests
- #:julia-package-uuid "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
- #:phases
- (modify-phases %standard-phases
- (add-before 'check 'change-dir
- ;; Tests must be run from the testdir
- (lambda* (#:key source outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (chdir
- (string-append out "/share/julia/loadpath/URIs/test")))
- #t)))))
+ (list
+ #:julia-package-name "URIs" ;required to run tests
+ #:julia-package-uuid "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'change-dir
+ ;; Tests must be run from the testdir
+ (lambda* (#:key source outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (chdir
+ (string-append out "/share/julia/loadpath/URIs/test")))
+ #t)))))
;; required for tests
(inputs (list julia-json))
(home-page "https://github.com/JuliaWeb/URIs.jl";)
@@ -5578,7 +5625,7 @@ (define-public julia-unitful
(base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
(build-system julia-build-system)
(arguments
- `(#:parallel-tests? #f))
+ (list #:parallel-tests? #f))
(propagated-inputs
(list julia-constructionbase))
(home-page "https://painterqubits.github.io/Unitful.jl/stable/";)
@@ -5650,15 +5697,16 @@ (define-public julia-woodburymatrices
(base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
(build-system julia-build-system)
(arguments
- `(#:phases
- ,@(if (target-x86-32?)
- '((modify-phases %standard-phases
- (add-after 'unpack 'remove-failing-test-i686
- (lambda _
- (substitute* "test/woodbury.jl"
- (("@test logdet\\(W\\)")
- "@test_broken logdet(W)"))))))
- '(%standard-phases))))
+ (list
+ #:phases
+ (if (target-x86-32?)
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-failing-test-i686
+ (lambda _
+ (substitute* "test/woodbury.jl"
+ (("@test logdet\\(W\\)")
+ "@test_broken logdet(W)")))))
+ #~%standard-phases)))
(home-page "https://github.com/timholy/WoodburyMatrices.jl";)
(synopsis "Support for the Woodbury matrix identity for Julia")
(description "This package provides support for the Woodbury matrix
identity
@@ -5753,7 +5801,7 @@ (define-public julia-zygote
(base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
(build-system julia-build-system)
(arguments
- `(#:tests? #f)) ;require CUDA, not packaged yet
+ (list #:tests? #f)) ;require CUDA, not packaged yet
(propagated-inputs
(list julia-abstractffts
julia-chainrules
base-commit: 6cae4e97927dd215bc5af84e7c4d938a26fb40c1
--
2.34.0
- [bug#54088] [PATCH 0/2] julia-build-system: Add missing julia-pkg-deps, Efraim Flashner, 2022/02/21
- [bug#54088] [PATCH 1/2] build: julia: Add julia-package-dependencies as keyword., Efraim Flashner, 2022/02/21
- [bug#54088] [PATCH 2/2] gnu: julia-media: Use julia-package-dependencies., Efraim Flashner, 2022/02/21
- [bug#54088] [PATCH 0/2] julia-build-system: Add missing julia-pkg-deps, zimoun, 2022/02/23
- [bug#54088] [PATCH v2 01/19] gnu: julia-xyz: Adjust style using G-expressions.,
zimoun <=
- [bug#54088] [PATCH v2 06/19] gnu: julia-dataframes: Delete trailing #t., zimoun, 2022/02/23
- [bug#54088] [PATCH v2 07/19] gnu: julia-datavalues: Delete trailing #t., zimoun, 2022/02/23
- [bug#54088] [PATCH v2 08/19] gnu: julia-finitediff: Delete trailing #t., zimoun, 2022/02/23
- [bug#54088] [PATCH v2 10/19] gnu: julia-http: Delete trailing #t., zimoun, 2022/02/23