[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[bug#54635] [PATCH v2 2/5] gnu: htslib: Add bzip2 and xz to inputs.
From: |
Arun Isaac |
Subject: |
[bug#54635] [PATCH v2 2/5] gnu: htslib: Add bzip2 and xz to inputs. |
Date: |
Thu, 31 Mar 2022 12:58:46 +0530 |
htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.
* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4e1028b3ce..2f6f3efb66 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8,7 +8,7 @@
;;; Copyright © 2016, 2020, 2022 Marius Bakke <marius@gnu.org>
;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2017, 2021 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu
<madalinionel.patrascu@mdc-berlin.de>
@@ -4788,7 +4788,7 @@ (define-public htslib
"--enable-libcurl"
"--enable-s3")))
(inputs
- (list curl openssl))
+ (list bzip2 curl openssl xz))
;; This is referred to in the pkg-config file as a required library.
(propagated-inputs
(list zlib))
--
2.34.0
- [bug#54635] [PATCH 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux., (continued)
- [bug#54635] [PATCH 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux., Efraim Flashner, 2022/03/31
- [bug#54635] [PATCH v2 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux., Arun Isaac, 2022/03/31
- [bug#54635] [PATCH v2 3/5] gnu: atomic-queue: Run tests correctly., Arun Isaac, 2022/03/31
- [bug#54635] [PATCH v2 4/5] gnu: atomic-queue: Do not look for boost when cross-compiling., Arun Isaac, 2022/03/31
- [bug#54635] [PATCH v2 5/5] gnu: Add wfmash., Arun Isaac, 2022/03/31
- [bug#54635] [PATCH v2 5/5] gnu: Add wfmash., Maxime Devos, 2022/03/31
- [bug#54635] [PATCH v2 5/5] gnu: Add wfmash., Efraim Flashner, 2022/03/31
- [bug#54635] [PATCH v2 5/5] gnu: Add wfmash., Maxime Devos, 2022/03/31
- [bug#54635] [PATCH v2 5/5] gnu: Add wfmash., Efraim Flashner, 2022/03/31
- bug#54635: [PATCH v2 5/5] gnu: Add wfmash., Efraim Flashner, 2022/03/31
- [bug#54635] [PATCH v2 2/5] gnu: htslib: Add bzip2 and xz to inputs.,
Arun Isaac <=