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[bug#58879] [PATCH 5/5] gnu: Add r-decontam.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#58879] [PATCH 5/5] gnu: Add r-decontam. |
Date: |
Sun, 30 Oct 2022 01:16:08 +0200 |
* gnu/packages/bioconductor.scm (r-decontam): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce95a9e5af..e1175e46f1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3220,6 +3220,33 @@ (define-public r-deconrnaseq
profiles.")
(license license:gpl2)))
+(define-public r-decontam
+ (package
+ (name "r-decontam")
+ (version "1.16.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "decontam" version))
+ (sha256
+ (base32
+ "1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"))))
+ (properties `((upstream-name . "decontam")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ggplot2
+ r-reshape2))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/benjjneb/decontam")
+ (synopsis
+ "Identification of the contaminants in marker-gene and metagenomics data")
+ (description
+ "This package offers simple statistical identification of contaminating
+sequence features in marker-gene or metagenomics data. Works on any kind of
+feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic
+groups, MAGs,...). Requires DNA quantitation data or sequenced negative
control
+samples.")
+ (license license:artistic2.0)))
+
(define-public r-deconvr
(package
(name "r-deconvr")
--
2.38.0