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[bug#59870] [PATCH 12/12] gnu: Add r-animalcules.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#59870] [PATCH 12/12] gnu: Add r-animalcules. |
Date: |
Wed, 7 Dec 2022 06:18:37 +0100 |
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
---
gnu/packages/bioconductor.scm | 59 +++++++++++++++++++++++++++++++++++
1 file changed, 59 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c62c5970b8..fa5b38be86 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2337,6 +2337,65 @@ (define-public r-ancombc
these biases and construct statistically consistent estimators.")
(license license:artistic2.0)))
+(define-public r-animalcules
+ (package
+ (name "r-animalcules")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "animalcules" version))
+ (sha256
+ (base32
+ "1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"))))
+ (properties `((upstream-name . "animalcules")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ape
+ r-assertthat
+ r-biomformat
+ r-caret
+ r-covr
+ r-deseq2
+ r-dplyr
+ r-dt
+ r-forcats
+ r-ggplot2
+ r-glmnet
+ r-gunifrac
+ r-lattice
+ r-limma
+ r-magrittr
+ r-matrix
+ r-multiassayexperiment
+ r-plotly
+ r-plotroc
+ r-rentrez
+ r-reshape2
+ r-s4vectors
+ r-scales
+ r-shiny
+ r-shinyjs
+ r-summarizedexperiment
+ r-tibble
+ r-tsne
+ r-umap
+ r-vegan
+ r-xml))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/compbiomed/animalcules")
+ (synopsis "Interactive microbiome analysis toolkit")
+ (description
+ "@code{Animalcules} is an R package for utilizing up-to-date data
analytics,
+visualization methods, and machine learning models to provide users an
easy-to-use
+interactive microbiome analysis framework. It can be used as a standalone
software
+package or users can explore their data with the accompanying interactive R
Shiny
+application. Traditional microbiome analysis such as alpha/beta diversity and
+differential abundance analysis are enhanced, while new methods like biomarker
+identification are introduced by animalcules. Powerful interactive and dynamic
+figures generated by animalcules enable users to understand their data better
and
+discover new insights.")
+ (license license:artistic2.0)))
+
(define-public r-aldex2
(package
(name "r-aldex2")
--
2.38.1
- [bug#59870] [PATCH] gnu: Add r-animalcules, r-plotroc, r-gridsvg, r-gunifrac, r-dirmult, r-modeest, r-fbasics, r-timeseries, r-gss, r-stable, r-rmutil, r-statip., address@hidden, 2022/12/07
- [bug#59870] [PATCH 01/12] gnu: Add r-statip., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 03/12] gnu: Add r-stable., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 02/12] gnu: Add r-rmutil., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 04/12] gnu: Add r-gss., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 08/12] gnu: Add r-dirmult., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 10/12] gnu: Add r-gridsvg., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 09/12] gnu: Add r-gunifrac., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 12/12] gnu: Add r-animalcules.,
Mădălin Ionel Patrașcu <=
- [bug#59870] [PATCH 05/12] gnu: Add r-timeseries., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 06/12] gnu: Add r-fbasics., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 11/12] gnu: Add r-plotroc., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 07/12] gnu: Add r-modeest., Mădălin Ionel Patrașcu, 2022/12/07
- bug#59870: [PATCH 01/12] gnu: Add r-statip., Ricardo Wurmus, 2022/12/12