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[bug#59911] [PATCH 7/7] gnu: Add r-wpm.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#59911] [PATCH 7/7] gnu: Add r-wpm. |
Date: |
Thu, 8 Dec 2022 22:13:22 +0100 |
* gnu/packages/bioconductor.scm (r-wpm): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c62c5970b8..21b69cab01 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12244,6 +12244,48 @@ (define-public r-wppi
scores and a path search algorithm.")
(license license:expat)))
+(define-public r-wpm
+ (package
+ (name "r-wpm")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "wpm" version))
+ (sha256
+ (base32
+ "05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52"))))
+ (properties `((upstream-name . "wpm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-cli
+ r-config
+ r-dplyr
+ r-dt
+ r-ggplot2
+ r-golem
+ r-logging
+ r-rcolorbrewer
+ r-rlang
+ r-shiny
+ r-shinycustomloader
+ r-shinydashboard
+ r-shinywidgets
+ r-stringr
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/HelBor/wpm")
+ (synopsis "Generating well plate maker")
+ (description
+ "The @acronym{WPM, Well-Plate Maker} is a Shiny application deployed as an
+R package. Functions for a command-line/script use are available. The WPM
allows
+users to generate well plate maps to carry out their experiments while
improving
+the handling of batch effects. In particular, it helps controlling the \"plate
+effect\" thanks to its ability to randomize samples over multiple well plates.
+The algorithm for placing the samples is inspired by the backtracking
algorithm:
+the samples are placed at random while respecting specific spatial
constraints.")
+ (license license:artistic2.0)))
+
(define-public r-wrench
(package
(name "r-wrench")
--
2.38.1
- [bug#59911] [PATCH] gnu: Add r-logging, r-shinycustomloader, r-anytime, r-shinywidgets, r-attempt, r-golem and r-wpm., address@hidden, 2022/12/08
- [bug#59911] [PATCH 1/7] gnu: Add r-logging., Mădălin Ionel Patrașcu, 2022/12/08
- [bug#59911] [PATCH 7/7] gnu: Add r-wpm.,
Mădălin Ionel Patrașcu <=
- [bug#59911] [PATCH 2/7] gnu: Add r-shinycustomloader., Mădălin Ionel Patrașcu, 2022/12/08
- [bug#59911] [PATCH 3/7] gnu: Add r-anytime., Mădălin Ionel Patrașcu, 2022/12/08
- [bug#59911] [PATCH 6/7] gnu: Add r-golem., Mădălin Ionel Patrașcu, 2022/12/08
- [bug#59911] [PATCH 4/7] gnu: Add r-shinywidgets., Mădălin Ionel Patrașcu, 2022/12/08
- [bug#59911] [PATCH 5/7] gnu: Add r-attempt., Mădălin Ionel Patrașcu, 2022/12/08
- [bug#59911] [PATCH 1/7] gnu: Add r-logging., Ricardo Wurmus, 2022/12/12