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[bug#63619] [PATCH 8/9] gnu: Add python-pytensor.
From: |
Vinicius Monego |
Subject: |
[bug#63619] [PATCH 8/9] gnu: Add python-pytensor. |
Date: |
Sat, 20 May 2023 23:12:40 +0000 |
* gnu/packages/python-science.scm (python-pytensor): New variable.
---
gnu/packages/python-science.scm | 78 +++++++++++++++++++++++++++++++++
1 file changed, 78 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index d076c877fc..a419f4d023 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -754,6 +754,84 @@ (define-public python-xarray-einstats
functions and around einops with an API and features adapted to xarray.")
(license license:asl2.0)))
+(define-public python-pytensor
+ (package
+ (name "python-pytensor")
+ (version "2.11.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pymc-devs/pytensor")
+ (commit (string-append "rel-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1qg38jv1244v5lzjgnb116jpz1gj8p3c5pjxr2nvkx7qpjwzxvk6"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases #~(modify-phases %standard-phases
+ (add-after 'unpack 'write-permissions
+ (lambda _
+ (setenv "HOME" "/tmp")))
+ (add-after 'unpack 'versioneer
+ (lambda _
+ ;; Our version of versioneer needs setup.cfg.
+ ;; This is adapted from pyproject.toml.
+ (with-output-to-file "setup.cfg"
+ (lambda ()
+ (display
+ "[versioneer]
+VCS = git
+style = pep440
+versionfile_source = pytensor/_version.py
+versionfile_build = pytensor/_version.py
+tag_prefix = rel-
+")))
+ (invoke "versioneer" "install")
+ (substitute* "setup.py"
+ (("versioneer.get_version\\(\\)")
+ (string-append "\""
+ #$version "\"")))))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; Test discovery fails, have to call pytest by
hand
+ ;; test_tensor_basic.py file requires JAX.
+ (invoke "python" "-m" "pytest" "-vv"
+ "--ignore"
+ "tests/link/jax/test_tensor_basic.py"
+ ;; Skip benchmark tests.
+ "-k"
+ (string-append "not test_elemwise_speed"
+ " and not test_logsumexp_benchmark"
+ " and not test_fused_elemwise_benchmark"
+ " and not test_scan_multiple_output"
+ " and not test_vector_taps_benchmark"
+ " and not test_cython_performance")
+ ;; Skip computationally intensive tests.
+ "--ignore" "tests/scan/"
+ "--ignore" "tests/tensor/"
+ "--ignore" "tests/sandbox/"
+ "--ignore" "tests/sparse/sandbox/")))))))
+ (native-inputs (list python-cython python-pytest python-versioneer))
+ (propagated-inputs (list python-cons
+ python-etuples
+ python-filelock
+ python-logical-unification
+ python-minikanren
+ python-numba
+ python-numpy
+ python-scipy
+ python-typing-extensions))
+ (home-page "https://pytensor.readthedocs.io/en/latest/")
+ (synopsis
+ "Library for mathematical expressions in multi-dimensional arrays")
+ (description
+ "PyTensor is a Python library that allows one to define,
+optimize, and efficiently evaluate mathematical expressions involving
+multi-dimensional arrays. It is a fork of the Aesara library.")
+ (license license:bsd-3)))
+
(define-public python-msgpack-numpy
(package
(name "python-msgpack-numpy")
--
2.34.1
- [bug#63619] [PATCH 0/9] Add PyMC., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 1/9] gnu: Add python-vega-datasets., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 2/9] gnu: Add python-altair., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 3/9] gnu: Add python-einops., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 4/9] gnu: python-xarray: Update to 2023.5.0., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 5/9] gnu: Add python-xarray-einstats., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 6/9] gnu: Add python-arviz., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 7/9] gnu: Add python-fastprogress., Vinicius Monego, 2023/05/20
- [bug#63619] [PATCH 8/9] gnu: Add python-pytensor.,
Vinicius Monego <=
- [bug#63619] [PATCH 9/9] gnu: Add python-pymc., Vinicius Monego, 2023/05/20