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guix gc fails with foreign key error

From: Florian Dold
Subject: guix gc fails with foreign key error
Date: Tue, 30 Oct 2018 17:00:29 +0100
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:60.0) Gecko/20100101 Thunderbird/60.0

Hi all,

"guix gc" currently fails for me on two separate machines, both are
running a recent version of GuixSD:

# guix gc
finding garbage collector roots...
deleting garbage...
guix gc: error: build failed: executing SQLite statement: FOREIGN KEY
constraint failed

# guix --version
guix (GNU Guix) 2f18b7329d9260cbada8cdec081765adfa82a5f4

The following commands though run through without any errors:

guix gc --verify
guix gc --verify=repair
guix gc --verify=contents

Is there any more info I can provide about this?  I saw some threads
about the same problem in the past, but it seems they got resolved by
just reinstalling the whole system.

I think it's pretty unlikely that this happened due to manual corruption
of the store, since it passes verification, and the problem occurred on
two different machines that were set up around the same time a few
months ago.

- Florian

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