[Octave-bug-tracker] [bug #57854] What's the status of sundials 5.1.0 IDADENSE and IDAKLU support in octave's 5.2.0 ?

[Doron Behar]

URL:
  <https://savannah.gnu.org/bugs/?57854>

                 Summary: What's the status of sundials 5.1.0 IDADENSE and
IDAKLU support in octave's 5.2.0 ?
                 Project: GNU Octave
            Submitted by: doronbehar
            Submitted on: Tue 18 Feb 2020 06:57:52 PM UTC
                Category: Configuration and Build System
                Severity: 3 - Normal
                Priority: 5 - Normal
              Item Group: Build Failure
                  Status: None
             Assigned to: None
         Originator Name: 
        Originator Email: 
             Open/Closed: Open
                 Release: 5.2.0
         Discussion Lock: Any
        Operating System: GNU/Linux

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Details:

We, at NixOS, would like to get these features working with the latest
sundials 5.1.0. See https://github.com/NixOS/nixpkgs/pull/79864 and get the
following configure warnings out of our build:


configure: WARNING: SUNDIALS IDA library does not include the IDADENSE linear
solver, ode15i and ode15s will be disabled
configure: WARNING: SUNDIALS IDA library not configured with IDAKLU, ode15i
and ode15s will not support the sparse Jacobian feature


Our sundials is built with the following cmake flags:


-DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_SKIP_BUILD_RPATH=ON
-DCMAKE_INSTALL_LOCALEDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/share/locale
-DCMAKE_INSTALL_LIBEXECDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/libexec
-DCMAKE_INSTALL_LIBDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/lib
-DCMAKE_INSTALL_DOCDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/share/doc/
-DCMAKE_INSTALL_INFODIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/share/info
-DCMAKE_INSTALL_MANDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/share/man
-DCMAKE_INSTALL_OLDINCLUDEDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/include
-DCMAKE_INSTALL_INCLUDEDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/include
-DCMAKE_INSTALL_SBINDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/sbin
-DCMAKE_INSTALL_BINDIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/bin
-DCMAKE_INSTALL_NAME_DIR=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/lib
-DCMAKE_POLICY_DEFAULT_CMP0025=NEW
-DCMAKE_OSX_SYSROOT=
-DCMAKE_OSX_ARCHITECTURES=x86_64
-DCMAKE_FIND_FRAMEWORK=last
-DCMAKE_STRIP=/nix/store/xpzdkp9y8fnliwrs2g5pygx2qmmbrv8w-binutils-2.31.1/bin/strip
-DCMAKE_RANLIB=/nix/store/xpzdkp9y8fnliwrs2g5pygx2qmmbrv8w-binutils-2.31.1/bin/ranlib
-DCMAKE_AR=/nix/store/xpzdkp9y8fnliwrs2g5pygx2qmmbrv8w-binutils-2.31.1/bin/ar
-DCMAKE_C_COMPILER=gcc
-DCMAKE_CXX_COMPILER=g++
-DCMAKE_INSTALL_PREFIX=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0
-DEXAMPLES_INSTALL_PATH=/nix/store/xjmky9izvli8ckakzhgls0i3ncn898w8-sundials-5.1.0/share/examples
-DKLU_ENABLE=ON
-DKLU_INCLUDE_DIR=/nix/store/gmy606sa4hkr0hld3vy6k4ha7hnn99sb-suitesparse-5.4.0/include
-DKLU_LIBRARY_DIR=/nix/store/gmy606sa4hkr0hld3vy6k4ha7hnn99sb-suitesparse-5.4.0/lib
-DSUNDIALS_INDEX_TYPE=int32_t
-DLAPACK_ENABLE=ON
-DLAPACK_LIBRARIES=/nix/store/vb35v6lsgi0qjx79p8vykd95pvl39dna-openblas-0.3.7/lib/libopenblas.so


The KLU flags are there in accordance with their installation guide -
https://github.com/LLNL/sundials/blob/v5.1.0/INSTALL_GUIDE.pdf

The resulting tree for the include directory of sundials is as following:


result
├── include
│   ├── arkode
│   │   ├── arkode_arkstep.h
│   │   ├── arkode_bandpre.h
│   │   ├── arkode_bbdpre.h
│   │   ├── arkode_butcher_dirk.h
│   │   ├── arkode_butcher_erk.h
│   │   ├── arkode_butcher.h
│   │   ├── arkode_erkstep.h
│   │   ├── arkode.h
│   │   ├── arkode_ls.h
│   │   └── arkode_mristep.h
│   ├── cvode
│   │   ├── cvode_bandpre.h
│   │   ├── cvode_bbdpre.h
│   │   ├── cvode_diag.h
│   │   ├── cvode_direct.h
│   │   ├── cvode.h
│   │   ├── cvode_ls.h
│   │   └── cvode_spils.h
│   ├── cvodes
│   │   ├── cvodes_bandpre.h
│   │   ├── cvodes_bbdpre.h
│   │   ├── cvodes_diag.h
│   │   ├── cvodes_direct.h
│   │   ├── cvodes.h
│   │   ├── cvodes_ls.h
│   │   └── cvodes_spils.h
│   ├── ida
│   │   ├── ida_bbdpre.h
│   │   ├── ida_direct.h
│   │   ├── ida.h
│   │   ├── ida_ls.h
│   │   └── ida_spils.h
│   ├── idas
│   │   ├── idas_bbdpre.h
│   │   ├── idas_direct.h
│   │   ├── idas.h
│   │   ├── idas_ls.h
│   │   └── idas_spils.h
│   ├── kinsol
│   │   ├── kinsol_bbdpre.h
│   │   ├── kinsol_direct.h
│   │   ├── kinsol.h
│   │   ├── kinsol_ls.h
│   │   └── kinsol_spils.h
│   ├── nvector
│   │   ├── nvector_manyvector.h
│   │   └── nvector_serial.h
│   ├── sundials
│   │   ├── LICENSE
│   │   ├── NOTICE
│   │   ├── sundials_band.h
│   │   ├── sundials_config.h
│   │   ├── sundials_dense.h
│   │   ├── sundials_direct.h
│   │   ├── sundials_fconfig.h
│   │   ├── sundials_fnvector.h
│   │   ├── sundials_futils.h
│   │   ├── sundials_iterative.h
│   │   ├── sundials_lapack.h
│   │   ├── sundials_linearsolver.h
│   │   ├── sundials_math.h
│   │   ├── sundials_matrix.h
│   │   ├── sundials_mpi_types.h
│   │   ├── sundials_nonlinearsolver.h
│   │   ├── sundials_nvector.h
│   │   ├── sundials_types.h
│   │   └── sundials_version.h
│   ├── sunlinsol
│   │   ├── sunlinsol_band.h
│   │   ├── sunlinsol_dense.h
│   │   ├── sunlinsol_klu.h
│   │   ├── sunlinsol_lapackband.h
│   │   ├── sunlinsol_lapackdense.h
│   │   ├── sunlinsol_pcg.h
│   │   ├── sunlinsol_spbcgs.h
│   │   ├── sunlinsol_spfgmr.h
│   │   ├── sunlinsol_spgmr.h
│   │   └── sunlinsol_sptfqmr.h
│   ├── sunmatrix
│   │   ├── sunmatrix_band.h
│   │   ├── sunmatrix_dense.h
│   │   └── sunmatrix_sparse.h
│   └── sunnonlinsol
│       ├── sunnonlinsol_fixedpoint.h
│       └── sunnonlinsol_newton.h


However, running configure for octave with the following `./configure` flags:


--disable-static
--disable-dependency-tracking
--prefix=/nix/store/ibbl7k5gyk7cz6q1hvcj5mpi4ky8ss33-octave-5.2.0
--enable-readline
--with-blas=openblas
--with-lapack=openblas
--enable-64


Still spits out the IDA related warnings:


configure: WARNING: SUNDIALS IDA library does not include the IDADENSE linear
solver, ode15i and ode15s will be disabled
configure: WARNING: SUNDIALS IDA library not configured with IDAKLU, ode15i
and ode15s will not support the sparse Jacobian feature


And the relevant parts of the config.log are as follows:


configure:77512: $PKG_CONFIG --exists --print-errors "sundials_ida"
Package sundials_ida was not found in the pkg-config search path.
Perhaps you should add the directory containing `sundials_ida.pc'
to the PKG_CONFIG_PATH environment variable
No package 'sundials_ida' found


And where the rest of the lookup after the ida stuff is here:
https://gist.github.com/a7eff71e581479b582bf1a1e0e59d1b3

Full log is here: https://gist.github.com/2efc7e8906a099cc3797701933b21415




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