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Re: hdf5 build error
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From: |
Richard Crozier |
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Subject: |
Re: hdf5 build error |
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Date: |
Mon, 4 Jan 2016 17:58:00 +0000 |
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User-agent: |
Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Thunderbird/38.4.0 |
On 04/01/16 05:25, John W. Eaton wrote:
On 01/03/2016 07:52 PM, Richard Crozier wrote:
Dear Maintainers,
<snip>
I checked in the following changeset:
http://hg.savannah.gnu.org/hgweb/octave/rev/13b9cac748f2
That should allow Octave to compile again when HDF5 is missing.
I tried configuring with
./configure --with-hdf5-includedir=/usr/include/hdf5/serial/
--with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/
I still get the warning about the hdf5 libs not being found, I didn't
actually try building after this. I also get both the warning and the
error if I configure with --without-hdf5.
I have no problem compiling on Debian systems with the following
configure options:
--with-hdf5-includedir=/usr/include/hdf5/serial
--with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial
What files are in those directories on your system? What does
config.log tell you about HDF5 detection?
jwe
So, before pulling your cset, I did make clean and configured with
./configure --with-hdf5-includedir=/usr/include/hdf5/serial
--with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial
This made the warning go away. Octave also successfully builds. I'm not
sure if I made a mistake when I did this before (probably). I have
attached the config log from this in spec-dir-config.log.
I then ran make clean again and plain ./configure. I attach the config
log from this in plain-config.log
here's the contents of /usr/include/hdf5/serial
------------------------------------------------------------------
H5AbstractDs.h h5d_provisional.mod H5FDpublic.h
H5Library.h H5pubconf.h
H5ACpublic.h H5Dpublic.h H5FDsec2.h
h5l.mod H5public.h
h5a.mod h5ds.mod H5FDstdio.h
H5Location.h h5r.mod
H5api_adpt.h H5DSpublic.h H5File.h
h5l_provisional.mod h5r_provisional.mod
h5a_provisional.mod H5DxferProp.h H5FloatType.h
H5Lpublic.h H5Rpublic.h
H5Apublic.h h5e.mod h5f.mod
h5lt.mod h5s.mod
H5ArrayType.h H5EnumType.h h5fortran_types.mod
H5LTpublic.h H5Spublic.h
H5AtomType.h h5e_provisional.mod h5f_provisional.mod
H5MMpublic.h H5StrType.h
H5Attribute.h H5Epubgen.h H5Fpublic.h
H5Object.h h5tb.mod
H5Classes.h H5Epublic.h h5global.mod
h5o.mod H5TBpublic.h
H5CommonFG.h H5Exception.h h5g.mod
h5o_provisional.mod h5t.mod
H5CompType.h H5f90i_gen.h H5Gpublic.h
H5Opublic.h h5t_provisional.mod
H5CppDoc.h H5f90i.h H5Group.h
H5overflow.h H5Tpublic.h
H5Cpp.h H5FaccProp.h H5IdComponent.h
H5PacketTable.h H5VarLenType.h
H5Cpublic.h H5FcreatProp.h h5im.mod
H5PLextern.h H5version.h
H5DataSet.h H5FDcore.h h5i.mod
H5PLpublic.h h5z.mod
H5DataSpace.h H5FDdirect.h H5IMpublic.h
h5p.mod H5Zpublic.h
H5DataType.h H5FDfamily.h H5Include.h
h5p_provisional.mod hdf5.h
h5_dble_interface.mod H5FDlog.h H5IntType.h
H5Ppublic.h hdf5_hl.h
H5DcreatProp.h H5FDmpi.h H5Ipublic.h
H5PredType.h hdf5.mod
h5d.mod H5FDmpio.h h5lib.mod
H5PropList.h
H5DOpublic.h H5FDmulti.h h5lib_provisional.mod
H5PTpublic.h
------------------------------------------------------------------
and /usr/lib/x86_64-linux-gnu/hdf5/serial
------------------------------------------------------------------
ls /usr/lib/x86_64-linux-gnu/hdf5/serial
include libhdf5.a libhdf5_cpp.so libhdf5_fortran.so
libhdf5_hl_cpp.a libhdf5hl_fortran.a libhdf5_hl.so libhdf5.so
lib libhdf5_cpp.a libhdf5_fortran.a libhdf5_hl.a
libhdf5_hl_cpp.so libhdf5hl_fortran.so libhdf5.settings
------------------------------------------------------------------
Hope this is useful.
Richard
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
plain-config.log
Description: Text Data
spec-dirs-config.log
Description: Text Data