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01/01: gnu: Add r-dnacopy.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add r-dnacopy. |
Date: |
Wed, 16 Mar 2016 10:23:47 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 247d498aaa7938efe9acbd83ea8721e477a7236d
Author: Roel Janssen <address@hidden>
Date: Wed Mar 16 10:27:48 2016 +0100
gnu: Add r-dnacopy.
* gnu/packages/bioinformatics.scm (r-dnacopy): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 files changed, 22 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 190a058..bdd4412 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3887,6 +3887,28 @@ barplots or heatmaps.")
packages.")
(license license:artistic2.0)))
+(define-public r-dnacopy
+ (package
+ (name "r-dnacopy")
+ (version "1.44.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DNAcopy" version))
+ (sha256
+ (base32
+ "1c1px4rbr36xx929hp59k7ca9k5ab66qmn8k63fk13278ncm6h66"))))
+ (properties
+ `((upstream-name . "DNAcopy")))
+ (build-system r-build-system)
+ (inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "bioconductor.org/packages/DNAcopy")
+ (synopsis "Implementation of a circular binary segmentation algorithm")
+ (description "This package implements the circular binary segmentation
(CBS)
+algorithm to segment DNA copy number data and identify genomic regions with
+abnormal copy number.")
+ (license license:gpl2+)))
+
(define-public r-s4vectors
(package
(name "r-s4vectors")