01/02: gnu: pigx-bsseq: Fix build.

[guix-commits]

rekado pushed a commit to branch wip-r
in repository guix.

commit df3e5cfa05c45439fee30375cde21f4c3d32e26b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sun May 29 00:34:29 2022 +0200

    gnu: pigx-bsseq: Fix build.
    
    * gnu/packages/bioinformatics.scm (pigx-bsseq)[arguments]: Patch build 
system
    in 'autoreconf phase.
---
 gnu/packages/bioinformatics.scm | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1b118908da..0945bddbe7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11191,6 +11191,15 @@ in an easily configurable manner.")
        (modify-phases %standard-phases
          (add-before 'bootstrap 'autoreconf
            (lambda _
+             ;; This was fixed in commit
+             ;; d56ac732524da659afbbb0972f7a87fa178ae58e, but there is no
+             ;; release with this fix.
+             (call-with-output-file "VERSION"
+               (lambda (port) (display ,version port)))
+             ;; https://github.com/BIMSBbioinfo/pigx_bsseq/issues/181
+             (substitute* "m4/ax_r_package.m4"
+               (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
+                "if(system.file(package=\"PKG\") == \"\")"))
              (invoke "autoreconf" "-vif")))
          (add-before 'configure 'set-PYTHONPATH
            (lambda _