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08/08: gnu: Add hh-suite.
From: |
guix-commits |
Subject: |
08/08: gnu: Add hh-suite. |
Date: |
Wed, 6 Jul 2022 08:05:24 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 6211ecfec804f16ab99382ca3d639b2d5d4a62d5
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jul 6 13:42:36 2022 +0200
gnu: Add hh-suite.
* gnu/packages/bioinformatics.scm (hh-suite): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 285343f632..525509f56d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15839,6 +15839,35 @@ workflows from concise descriptions in ccwl. It is
implemented as an
language.")
(license license:gpl3+)))
+(define-public hh-suite
+ (package
+ (name "hh-suite")
+ (version "3.3.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/soedinglab/hh-suite")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1bcmzg0ii6nkda2xm5jdddbwkgsag7k38j20af0c9chr2mbxwx4d"))
+ (modules '((guix build utils)))
+ (snippet
+ '(delete-file-recursively "lib/simde"))))
+ (build-system cmake-build-system)
+ (arguments '(#:tests? #false)) ;no test target
+ (inputs
+ (list openmpi simde))
+ (native-inputs
+ (list perl pkg-config xxd))
+ (home-page
"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7")
+ (synopsis "Remote protein homology detection suite")
+ (description "The HH-suite is a software package for sensitive protein
sequence searching
+based on the pairwise alignment of hidden Markov models (HMMs).")
+ (license license:gpl3+)))
+
(define-public wfmash
(package
(name "wfmash")
- branch master updated (422e5d3513 -> 6211ecfec8), guix-commits, 2022/07/06
- 07/08: gnu: Add rust-trycmd-0.13., guix-commits, 2022/07/06
- 04/08: gnu: Add rust-kstring-2., guix-commits, 2022/07/06
- 01/08: gnu: Add rust-libtest-mimic-0.3., guix-commits, 2022/07/06
- 06/08: gnu: Add rust-toml-edit-0.14., guix-commits, 2022/07/06
- 02/08: gnu: Add rust-similar-2., guix-commits, 2022/07/06
- 05/08: gnu: Add rust-pretty-assertions-1., guix-commits, 2022/07/06
- 03/08: gnu: Add rust-snapbox-0.2., guix-commits, 2022/07/06
- 08/08: gnu: Add hh-suite.,
guix-commits <=