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71/449: gnu: r-infercnv: Update to 1.14.0.
From: |
guix-commits |
Subject: |
71/449: gnu: r-infercnv: Update to 1.14.0. |
Date: |
Tue, 22 Nov 2022 15:46:52 -0500 (EST) |
rekado pushed a commit to branch wip-bioconductor
in repository guix.
commit dd93570a69fdfe913499af973781f6e8be285ff5
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Thu Nov 17 03:50:07 2022 +0100
gnu: r-infercnv: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.0.
[propagated-inputs]: Remove r-leiden and r-reshape. Add r-igraph,
r-reshape2,
and r-seurat.
---
gnu/packages/bioconductor.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 934a99ec64..e1b2ff8ee8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3731,14 +3731,14 @@ arbitrary genomic intervals along chromosomal
ideogram.")
(define-public r-infercnv
(package
(name "r-infercnv")
- (version "1.12.0")
+ (version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "infercnv" version))
(sha256
(base32
- "01f021fdxm058733rky46dlvqg7dmf5mn5x9lnq0fspp5665w3bl"))))
+ "11hgw6c67gd3ih5q14a520sjmnlv56qw19z0i6s5pz2slmgflpry"))))
(properties `((upstream-name . "infercnv")))
(build-system r-build-system)
(inputs (list python))
@@ -3762,15 +3762,16 @@ arbitrary genomic intervals along chromosomal
ideogram.")
r-gplots
r-gridextra
r-hiddenmarkov
- r-leiden
+ r-igraph
r-matrix
r-paralleldist
r-phyclust
r-rann
r-rcolorbrewer
- r-reshape
+ r-reshape2
r-rjags
r-singlecellexperiment
+ r-seurat
r-summarizedexperiment
r-tidyr))
(native-inputs (list r-knitr))
- 26/449: gnu: r-aneufinder: Update to 1.26.0., (continued)
- 26/449: gnu: r-aneufinder: Update to 1.26.0., guix-commits, 2022/11/22
- 28/449: gnu: r-annmap: Update to 1.40.0., guix-commits, 2022/11/22
- 30/449: gnu: r-aseb: Update to 1.42.0., guix-commits, 2022/11/22
- 33/449: gnu: r-assessorf: Update to 1.16.0., guix-commits, 2022/11/22
- 37/449: gnu: r-attract: Update to 1.50.0., guix-commits, 2022/11/22
- 42/449: gnu: r-bac: Update to 1.58.0., guix-commits, 2022/11/22
- 56/449: gnu: r-debcam: Update to 1.16.0., guix-commits, 2022/11/22
- 73/449: gnu: r-isoformswitchanalyzer: Update to 1.20.0., guix-commits, 2022/11/22
- 52/449: gnu: r-cummerbund: Update to 2.40.0., guix-commits, 2022/11/22
- 35/449: gnu: r-atena: Update to 1.4.0., guix-commits, 2022/11/22
- 71/449: gnu: r-infercnv: Update to 1.14.0.,
guix-commits <=
- 54/449: gnu: r-damefinder: Update to 1.10.0., guix-commits, 2022/11/22
- 72/449: gnu: r-iranges: Update to 2.32.0., guix-commits, 2022/11/22
- 44/449: gnu: r-badregionfinder: Update to 1.26.0., guix-commits, 2022/11/22
- 88/449: gnu: r-biobase: Update to 2.58.0., guix-commits, 2022/11/22
- 86/449: gnu: r-aroma-light: Update to 3.28.0., guix-commits, 2022/11/22
- 106/449: gnu: r-ensembldb: Update to 2.22.0., guix-commits, 2022/11/22
- 103/449: gnu: r-dittoseq: Update to 1.10.0., guix-commits, 2022/11/22
- 02/449: gnu: Add r-hdo-db., guix-commits, 2022/11/22
- 06/449: gnu: Add r-rorcid., guix-commits, 2022/11/22
- 07/449: gnu: Add r-gson., guix-commits, 2022/11/22