[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
90/457: gnu: r-biocparallel: Update to 1.32.1.
From: |
guix-commits |
Subject: |
90/457: gnu: r-biocparallel: Update to 1.32.1. |
Date: |
Thu, 24 Nov 2022 06:36:48 -0500 (EST) |
rekado pushed a commit to branch wip-bioconductor
in repository guix.
commit 9048d502dab1a18091ee652671a7c88e9eaffe0a
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Thu Nov 17 03:50:08 2022 +0100
gnu: r-biocparallel: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.1.
[arguments]<phases>: Update 'make-reproducible' to released files.
[propagated-inputs]: Add r-cpp11.
---
gnu/packages/bioconductor.scm | 12 +++++-------
1 file changed, 5 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9aa18d8d76..ad26fbe153 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4589,13 +4589,13 @@ only one command.")
(define-public r-biocparallel
(package
(name "r-biocparallel")
- (version "1.30.3")
+ (version "1.32.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BiocParallel" version))
(sha256
(base32
- "1rs3wmasl9mx7f399iclvm0bnvggvjj2a88zbi294r5m8wxqlc92"))))
+ "1fkfbs0n0sdssli7ibrswkfag080kgv8n1zf6ssxx729g1fz3m3h"))))
(properties
`((upstream-name . "BiocParallel")))
(build-system r-build-system)
@@ -4607,18 +4607,16 @@ only one command.")
;; Remove generated documentation.
(for-each delete-file
'("inst/doc/BiocParallel_BatchtoolsParam.pdf"
- "inst/doc/Introduction_To_BiocParallel.pdf"
"inst/doc/Errors_Logs_And_Debugging.pdf"
"inst/doc/BiocParallel_BatchtoolsParam.R"
"inst/doc/Introduction_To_BiocParallel.R"
- "inst/doc/Errors_Logs_And_Debugging.R"))
+ "inst/doc/Errors_Logs_And_Debugging.R"
+ "inst/doc/Random_Numbers.R"))
;; Remove time-dependent macro
(substitute* '("inst/doc/BiocParallel_BatchtoolsParam.Rnw"
- "inst/doc/Introduction_To_BiocParallel.Rnw"
"inst/doc/Errors_Logs_And_Debugging.Rnw"
"vignettes/BiocParallel_BatchtoolsParam.Rnw"
- "vignettes/Introduction_To_BiocParallel.Rnw"
"vignettes/Errors_Logs_And_Debugging.Rnw")
(("\\today") "later"))
@@ -4628,7 +4626,7 @@ only one command.")
(string-append
m "; if (!is.na(Sys.getenv(\"SOURCE_DATE_EPOCH\")))
{set.seed(100)}\n"))))))))
(propagated-inputs
- (list r-bh r-codetools r-futile-logger r-snow))
+ (list r-bh r-cpp11 r-codetools r-futile-logger r-snow))
(native-inputs
(list r-knitr))
(home-page "https://bioconductor.org/packages/BiocParallel")
- 65/457: gnu: r-deepsnv: Update to 1.44.0., (continued)
- 65/457: gnu: r-deepsnv: Update to 1.44.0., guix-commits, 2022/11/24
- 74/457: gnu: r-affy: Update to 1.76.0., guix-commits, 2022/11/24
- 53/457: gnu: r-dama: Update to 1.70.0., guix-commits, 2022/11/24
- 55/457: gnu: r-dearseq: Update to 1.10.0., guix-commits, 2022/11/24
- 61/457: gnu: r-deconrnaseq: Update to 1.40.0., guix-commits, 2022/11/24
- 63/457: gnu: r-deconvr: Update to 1.4.0., guix-commits, 2022/11/24
- 75/457: gnu: r-affycomp: Update to 1.74.0., guix-commits, 2022/11/24
- 68/457: gnu: r-drimseq: Update to 1.26.0., guix-commits, 2022/11/24
- 48/457: gnu: r-barcodetrackr: Update to 1.6.0., guix-commits, 2022/11/24
- 46/457: gnu: r-bandits: Update to 1.14.0., guix-commits, 2022/11/24
- 90/457: gnu: r-biocparallel: Update to 1.32.1.,
guix-commits <=
- 99/457: gnu: r-deseq2: Update to 1.38.1., guix-commits, 2022/11/24
- 100/457: gnu: r-dexseq: Update to 1.44.0., guix-commits, 2022/11/24
- 103/457: gnu: r-dittoseq: Update to 1.10.0., guix-commits, 2022/11/24
- 106/457: gnu: r-ensembldb: Update to 2.22.0., guix-commits, 2022/11/24
- 110/457: gnu: r-geneoverlap: Update to 1.34.0., guix-commits, 2022/11/24
- 116/457: gnu: r-genomicranges: Update to 1.50.1., guix-commits, 2022/11/24
- 121/457: gnu: r-impute: Update to 1.72.1., guix-commits, 2022/11/24
- 115/457: gnu: r-genomicfiles: Update to 1.34.0., guix-commits, 2022/11/24
- 124/457: gnu: r-lfa: Update to 1.28.0., guix-commits, 2022/11/24
- 128/457: gnu: r-muscat: Update to 1.12.0., guix-commits, 2022/11/24