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71/457: gnu: r-infercnv: Update to 1.14.0.
From: |
guix-commits |
Subject: |
71/457: gnu: r-infercnv: Update to 1.14.0. |
Date: |
Thu, 24 Nov 2022 06:36:44 -0500 (EST) |
rekado pushed a commit to branch wip-bioconductor
in repository guix.
commit e73a833dd25223de684ed6bbd6454e12e2724308
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Thu Nov 17 03:50:07 2022 +0100
gnu: r-infercnv: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.0.
[propagated-inputs]: Remove r-leiden and r-reshape. Add r-igraph,
r-reshape2,
and r-seurat.
---
gnu/packages/bioconductor.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3e1a22cca4..04dbd0f8e7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3772,14 +3772,14 @@ arbitrary genomic intervals along chromosomal
ideogram.")
(define-public r-infercnv
(package
(name "r-infercnv")
- (version "1.12.0")
+ (version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "infercnv" version))
(sha256
(base32
- "01f021fdxm058733rky46dlvqg7dmf5mn5x9lnq0fspp5665w3bl"))))
+ "11hgw6c67gd3ih5q14a520sjmnlv56qw19z0i6s5pz2slmgflpry"))))
(properties `((upstream-name . "infercnv")))
(build-system r-build-system)
(inputs (list python))
@@ -3803,15 +3803,16 @@ arbitrary genomic intervals along chromosomal
ideogram.")
r-gplots
r-gridextra
r-hiddenmarkov
- r-leiden
+ r-igraph
r-matrix
r-paralleldist
r-phyclust
r-rann
r-rcolorbrewer
- r-reshape
+ r-reshape2
r-rjags
r-singlecellexperiment
+ r-seurat
r-summarizedexperiment
r-tidyr))
(native-inputs (list r-knitr))
- 145/457: gnu: r-rsamtools: Update to 2.14.0., (continued)
- 145/457: gnu: r-rsamtools: Update to 2.14.0., guix-commits, 2022/11/24
- 146/457: gnu: r-rtracklayer: Update to 1.58.0., guix-commits, 2022/11/24
- 147/457: gnu: r-scannotatr: Update to 1.4.0., guix-commits, 2022/11/24
- 148/457: gnu: r-scdblfinder: Update to 1.12.0., guix-commits, 2022/11/24
- 151/457: gnu: r-seqlogo: Update to 1.64.0., guix-commits, 2022/11/24
- 157/457: gnu: r-slingshot: Update to 2.6.0., guix-commits, 2022/11/24
- 158/457: gnu: r-stager: Update to 1.20.0., guix-commits, 2022/11/24
- 166/457: gnu: r-variantannotation: Update to 1.44.0., guix-commits, 2022/11/24
- 26/457: gnu: r-aneufinder: Update to 1.26.0., guix-commits, 2022/11/24
- 31/457: gnu: r-asgsca: Update to 1.32.0., guix-commits, 2022/11/24
- 71/457: gnu: r-infercnv: Update to 1.14.0.,
guix-commits <=
- 86/457: gnu: r-aroma-light: Update to 3.28.0., guix-commits, 2022/11/24
- 92/457: gnu: r-biovizbase: Update to 1.46.0., guix-commits, 2022/11/24
- 101/457: gnu: r-diffcyt: Update to 1.18.0., guix-commits, 2022/11/24
- 104/457: gnu: r-edaseq: Update to 2.32.0., guix-commits, 2022/11/24
- 114/457: gnu: r-genomicfeatures: Update to 1.50.2., guix-commits, 2022/11/24
- 122/457: gnu: r-interactivedisplaybase: Update to 1.36.0., guix-commits, 2022/11/24
- 134/457: gnu: r-organism-dplyr: Update to 1.26.0., guix-commits, 2022/11/24
- 171/457: gnu: r-zlibbioc: Update to 1.44.0., guix-commits, 2022/11/24
- 181/457: gnu: r-multtest: Update to 2.54.0., guix-commits, 2022/11/24
- 191/457: gnu: r-riboprofiling: Update to 1.28.0., guix-commits, 2022/11/24