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08/08: gnu: r-ancombc: Update to 2.0.1.
From: |
guix-commits |
Subject: |
08/08: gnu: r-ancombc: Update to 2.0.1. |
Date: |
Thu, 24 Nov 2022 12:03:18 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c29d999a34d7dbb447446e0abd376ec3a27fdf54
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 24 18:00:09 2022 +0100
gnu: r-ancombc: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1.
[propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add
r-cvxr, r-emmeans,
r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors,
r-singlecellexperiment, r-summarizedexperiment, and
r-treesummarizedexperiment.
---
gnu/packages/bioconductor.scm | 21 ++++++++++++++-------
1 file changed, 14 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0d4110bc20..bb319a13e5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2287,33 +2287,40 @@ analysis, modelling, and visualization of spike-in
controls.")
(define-public r-ancombc
(package
(name "r-ancombc")
- (version "1.6.1")
+ (version "2.0.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ANCOMBC" version))
(sha256
(base32
- "1p9yryv85qk7m3hbflmpdffd3azpsifcw54x1rp8sb67yjmq3whq"))))
+ "1bwzvi6j3s66dcll1lb4xy25j4nfn1ln6mc3flh0wgy13l26x8m6"))))
(properties `((upstream-name . "ANCOMBC")))
(build-system r-build-system)
(propagated-inputs
- (list r-desctools
+ (list r-cvxr
+ r-desctools
r-doparallel
r-dorng
r-dplyr
+ r-emmeans
r-energy
r-foreach
r-hmisc
+ r-lme4
+ r-lmertest
r-magrittr
r-mass
- r-microbiome
- r-nlme
+ r-mia
r-nloptr
- r-phyloseq
r-rdpack
r-rlang
+ r-rngtools
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment
r-tibble
- r-tidyr))
+ r-tidyr
+ r-treesummarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/FrederickHuangLin/ANCOMBC")
(synopsis "Analysis of compositions of microbiomes with bias correction")
- branch master updated (a8c36bf8c4 -> c29d999a34), guix-commits, 2022/11/24
- 04/08: gnu: Add r-ecosolver., guix-commits, 2022/11/24
- 03/08: gnu: Add r-scs., guix-commits, 2022/11/24
- 08/08: gnu: r-ancombc: Update to 2.0.1.,
guix-commits <=
- 02/08: gnu: Add r-osqp., guix-commits, 2022/11/24
- 06/08: gnu: Add r-treesummarizedexperiment., guix-commits, 2022/11/24
- 07/08: gnu: Add r-mia., guix-commits, 2022/11/24
- 01/08: gnu: Add r-ancombc., guix-commits, 2022/11/24
- 05/08: gnu: Add r-cvxr., guix-commits, 2022/11/24