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06/08: gnu: Add r-treesummarizedexperiment.
From: |
guix-commits |
Subject: |
06/08: gnu: Add r-treesummarizedexperiment. |
Date: |
Thu, 24 Nov 2022 12:03:17 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 90d8ac279fcffe12969e0bdd43a07363c212942e
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 24 17:28:28 2022 +0100
gnu: Add r-treesummarizedexperiment.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d9303b5873..17d5195ce5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8989,6 +8989,39 @@ heterogeneous associated data to a single tree file and
can be served as a
platform for merging tree with associated data and converting file formats.")
(license license:artistic2.0)))
+(define-public r-treesummarizedexperiment
+ (package
+ (name "r-treesummarizedexperiment")
+ (version "2.6.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TreeSummarizedExperiment" version))
+ (sha256
+ (base32
+ "136zgpn1l059i64gj6iappr6nz42z4wbxlg3zpc5npwkqrz3val2"))))
+ (properties `((upstream-name . "TreeSummarizedExperiment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ape
+ r-biocgenerics
+ r-biocparallel
+ r-biostrings
+ r-dplyr
+ r-iranges
+ r-rlang
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-treeio))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/TreeSummarizedExperiment")
+ (synopsis "S4 class for data with tree structures")
+ (description
+ "@code{TreeSummarizedExperiment} extends @code{SingleCellExperiment} to
+include hierarchical information on the rows or columns of the rectangular
+data.")
+ (license license:gpl2+)))
+
(define-public r-ggtree
(package
(name "r-ggtree")
- branch master updated (a8c36bf8c4 -> c29d999a34), guix-commits, 2022/11/24
- 04/08: gnu: Add r-ecosolver., guix-commits, 2022/11/24
- 03/08: gnu: Add r-scs., guix-commits, 2022/11/24
- 08/08: gnu: r-ancombc: Update to 2.0.1., guix-commits, 2022/11/24
- 02/08: gnu: Add r-osqp., guix-commits, 2022/11/24
- 06/08: gnu: Add r-treesummarizedexperiment.,
guix-commits <=
- 07/08: gnu: Add r-mia., guix-commits, 2022/11/24
- 01/08: gnu: Add r-ancombc., guix-commits, 2022/11/24
- 05/08: gnu: Add r-cvxr., guix-commits, 2022/11/24