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01/04: gnu: Add python-vireosnp.
From: |
guix-commits |
Subject: |
01/04: gnu: Add python-vireosnp. |
Date: |
Fri, 20 Jan 2023 04:53:44 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit a7f1a1c0f0c1fbbac87c2a1b8736ebca8cca6e09
Author: Simon Tournier <zimon.toutoune@gmail.com>
AuthorDate: Tue Jan 17 18:30:38 2023 +0100
gnu: Add python-vireosnp.
* gnu/packages/bioinformatics.scm (python-vireosnp): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 36c9db90bd..d9c39fbb34 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17604,6 +17604,28 @@ interest.")
;; Any version of the GPL
(license license:gpl3+))))
+(define-public python-vireosnp
+ (package
+ (name "python-vireosnp")
+ (version "0.5.7")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "vireoSNP" version))
+ (sha256
+ (base32
+ "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d"))))
+ (build-system python-build-system)
+ (propagated-inputs (list python-matplotlib python-numpy python-scipy))
+ (home-page "https://github.com/huangyh09/vireoSNP")
+ (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
+ (description
+ "This package provides a deconvolution based on Single Nucleotide
+Position (SNP) for multiplexed scRNA-seq data. The name vireo stand for
+Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in
+multiplexed scRNA-seq data and follows the clone identification from
+single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.")
+ (license license:asl2.0)))
+
(define-public ccwl
(package
(name "ccwl")