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03/03: gnu: Add r-tsis.
From: |
guix-commits |
Subject: |
03/03: gnu: Add r-tsis. |
Date: |
Fri, 20 Jan 2023 05:08:06 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 43b7a033e3e96b7f3681e2693d63f1fb6b5af26e
Author: Navid Afkhami <navid.afkhami@mdc-berlin.de>
AuthorDate: Fri Jan 20 10:55:21 2023 +0100
gnu: Add r-tsis.
* gnu/packages/bioinformatics.scm (r-tsis): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bac094b1a5..1d473380b2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8216,6 +8216,38 @@ clustering analysis, differential analysis, motif
inference and exploration of
single cell ATAC-seq sequencing data.")
(license license:gpl3)))
+(define-public r-tsis
+ (let ((commit "24460298fbe1d26e4da390f6e4f3d4d9d62334dc")
+ (revision "1"))
+ (package
+ (name "r-tsis")
+ (version (git-version "0.2.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/wyguo/TSIS")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "17c8i25iwhldvs3c51m0wny40iffm8szzijalpwrxhzbv0xa94rb"))))
+ (properties `((upstream-name . "TSIS")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/wyguo/TSIS")
+ (synopsis "Time-series isoform switch of alternative splicing")
+ (description
+ "TSIS is used for detecting transcript isoform switches in time-series
+data. Transcript isoform switches occur when a pair of alternatively spliced
+isoforms reverse the order of their relative expression levels. TSIS
+characterizes the transcript switch by defining the isoform switch time-points
+for any pair of transcript isoforms within a gene. In addition, this tool
+describes the switch using five different features or metrics. Also it
+filters the results with user’s specifications and visualizes the results
+using different plots for the user to examine further details of the
+switches.")
+ (license license:gpl3))))
+
(define-public r-umi4cpackage
(let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20")
(revision "1"))