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Re: Guix Jupyter notebook
From: |
Efraim Flashner |
Subject: |
Re: Guix Jupyter notebook |
Date: |
Sun, 25 Apr 2021 09:14:31 +0300 |
On Sat, Apr 24, 2021 at 09:33:47AM +0000, phodina via wrote:
> I wanted to run a Jupyter notebook using Guix to define the inputs. However I
> run into an issue in python module. Could you help me with the
> DistributionNotFound error?
>
> $ guix install jupyter guix-jupyter
> ...
> $ guix describe
> Generation 21 Apr 21 2021 10:14:08 (current)
> guix 13c4a37
> repository URL:
> https://git.savannah.gnu.org/git/guix.git
> branch: master
> commit: 13c4a377f5a2e1240790679f3d5643385b6d7635
> $ jupyter notebook
> Traceback (most recent call last):
> File
> "/gnu/store/sqml7rpr1zamp1llapd208dv2n34anh5-python-jupyter-core-4.7.1/bin/.jupyter-real",
> line 6, in <module>
> from pkg_resources import load_entry_point
> File
> "/gnu/store/w32f5mp0x0sklmkxkm3gbidanxxj05k8-python-3.8.2/lib/python3.8/site-packages/pkg_resources/__init__.py",
> line 3251, in <module>
> def _initialize_master_working_set():
> File
> "/gnu/store/w32f5mp0x0sklmkxkm3gbidanxxj05k8-python-3.8.2/lib/python3.8/site-packages/pkg_resources/__init__.py",
> line 3234, in _call_aside
> f(*args, **kwargs)
> File
> "/gnu/store/w32f5mp0x0sklmkxkm3gbidanxxj05k8-python-3.8.2/lib/python3.8/site-packages/pkg_resources/__init__.py",
> line 3263, in _initialize_master_working_set
> working_set = WorkingSet._build_master()
> File
> "/gnu/store/w32f5mp0x0sklmkxkm3gbidanxxj05k8-python-3.8.2/lib/python3.8/site-packages/pkg_resources/__init__.py",
> line 583, in _build_master
> ws.require(__requires__)
> File
> "/gnu/store/w32f5mp0x0sklmkxkm3gbidanxxj05k8-python-3.8.2/lib/python3.8/site-packages/pkg_resources/__init__.py",
> line 900, in require
> needed = self.resolve(parse_requirements(requirements))
> File
> "/gnu/store/w32f5mp0x0sklmkxkm3gbidanxxj05k8-python-3.8.2/lib/python3.8/site-packages/pkg_resources/__init__.py",
> line 786, in resolve
> raise DistributionNotFound(req, requirers)
> pkg_resources.DistributionNotFound: The 'six' distribution was not found and
> is required by traitlets
>
I'm unable to reproduce this
(ins)efraim@3900XT ~/workspace/guix$ guix describe
Generation 19 Apr 25 2021 08:28:36 (current)
guix 8380b16
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: 8380b16a8a63eb1ed01cf9db1677e93aac8f3ae8
(ins)efraim@3900XT ~/workspace/guix$ guix environment -C -N --ad-hoc jupyter
guix-jupyter -- jupyter notebook
[I 06:08:47.078 NotebookApp] Writing notebook server cookie secret to
/home/efraim/.local/share/jupyter/runtime/notebook_cookie_secret
[I 06:08:47.222 NotebookApp] Serving notebooks from local directory:
/home/efraim/workspace/guix
[I 06:08:47.222 NotebookApp] Jupyter Notebook 6.3.0 is running at:
[I 06:08:47.222 NotebookApp]
http://localhost:8888/?token=52eaa1ab139b0ebbcc86e2f2939924eb706033ae2f5e9775
[I 06:08:47.222 NotebookApp] or
http://127.0.0.1:8888/?token=52eaa1ab139b0ebbcc86e2f2939924eb706033ae2f5e9775
[I 06:08:47.222 NotebookApp] Use Control-C to stop this server and shut down
all kernels (twice to skip confirmation).
[W 06:08:47.224 NotebookApp] No web browser found: could not locate runnable
browser.
[C 06:08:47.224 NotebookApp]
To access the notebook, open this file in a browser:
file:///home/efraim/.local/share/jupyter/runtime/nbserver-1-open.html
Or copy and paste one of these URLs:
http://localhost:8888/?token=52eaa1ab139b0ebbcc86e2f2939924eb706033ae2f5e9775
or
http://127.0.0.1:8888/?token=52eaa1ab139b0ebbcc86e2f2939924eb706033ae2f5e9775
^C[I 06:09:26.510 NotebookApp] interrupted
Serving notebooks from local directory: /home/efraim/workspace/guix
0 active kernels
Jupyter Notebook 6.3.0 is running at:
http://localhost:8888/?token=52eaa1ab139b0ebbcc86e2f2939924eb706033ae2f5e9775
or
http://127.0.0.1:8888/?token=52eaa1ab139b0ebbcc86e2f2939924eb706033ae2f5e9775
The traitlets error I was able to reproduce though:
(ins)efraim@3900XT ~/workspace/guix$ guix environment --ad-hoc python
python-traitlets -- python3 -c 'import traitlets'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File
"/gnu/store/3zwlgb58b6wca49yk9hjpz90s12crgid-profile/lib/python3.8/site-packages/traitlets/__init__.py",
line 1, in <module>
from .traitlets import *
File
"/gnu/store/3zwlgb58b6wca49yk9hjpz90s12crgid-profile/lib/python3.8/site-packages/traitlets/traitlets.py",
line 57, in <module>
import six
ModuleNotFoundError: No module named 'six'
I fixed that by adding python-six as a propagated-input to
python-traitlets. So in any case go ahead and run `guix pull` again and
try again, it should be working now.
--
Efraim Flashner <efraim@flashner.co.il> אפרים פלשנר
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