[bug #29291] The configure script doesn't play nice with non-flattened namespaces

[Nicola Pero]

Follow-up Comment #7, bug #29291 (project gnustep):

The gnustep-base configure.ac script seems wrong ... 

CPPFLAGS="$CPPFLAGS -I$GNUSTEP_SYSTEM_HEADERS
-I$GNUSTEP_LOCAL_HEADERS/$LIBRARY_COMBO"

LDFLAGS="$LDFLAGS -L$GNUSTEP_SYSTEM_LIBRARIES
-L$GNUSTEP_LOCAL_LIBRARIES" 

These just ignore the non-flattened case.  In the non-flattened case,
LIBRARY_COMBOs etc. need to be used. 

I was going to fix it myself, but regenerating gnustep-base's configure
requires autoconf 2.61, which I don't have, so I have to reinstall autoconf
etc.

Thanks

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