bug#57339: closed ([PATCH] gnu: Add r-pcaexplorer.)

[GNU bug Tracking System]

Your message dated Tue, 23 Aug 2022 11:53:30 +0200
with message-id <87wnazz3oa.fsf@elephly.net>
and subject line Re: [bug#57339] [PATCH] gnu: Add r-pcaexplorer.
has caused the debbugs.gnu.org bug report #57339,
regarding [PATCH] gnu: Add r-pcaexplorer.
to be marked as done.

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-- 
57339: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57339
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-pcaexplorer.
>
>
>
>
> Date: 
>
> Mon, 22 Aug 2022 12:59:41 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
> ---
>  gnu/packages/bioconductor.scm | 55 +++++++++++++++++++++++++++++++++++
>  1 file changed, 55 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 7d2ca413e9..cfcad75001 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -5049,6 +5049,61 @@ (define-public r-organismdbi
>  the fact that each of these packages implements a select methods.")
>      (license license:artistic2.0)))
>  
> +(define-public r-pcaexplorer
> +  (package
> +    (name "r-pcaexplorer")
> +    (version "2.22.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "pcaExplorer" version))
> +       (sha256
> +        (base32
> +         "0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl"))))
> +    (properties `((upstream-name . "pcaExplorer")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-annotationdbi
> +           r-base64enc
> +           r-biomart
> +           r-deseq2
> +           r-dt
> +           r-genefilter
> +           r-genomicranges
> +           r-ggplot2
> +           r-ggrepel
> +           r-go-db
> +           r-gostats
> +           r-heatmaply
> +           r-iranges
> +           r-knitr
> +           r-limma
> +           r-nmf
> +           r-pheatmap
> +           r-plotly
> +           r-plyr
> +           r-rmarkdown
> +           r-s4vectors
> +           r-scales
> +           r-shiny
> +           r-shinyace
> +           r-shinybs
> +           r-shinydashboard
> +           r-summarizedexperiment
> +           r-threejs
> +           r-tidyr
> +           r-topgo))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://github.com/federicomarini/pcaExplorer";)
> +    (synopsis
> +     "Interactive Visualization of RNA-seq Data Using a Principal Components 
> Approach")
> +    (description
> +     "This package provides functionality for interactive visualization of 
> RNA-seq
> +datasets based on Principal Components Analysis.  The methods provided allow 
> for
> +quick information extraction and effective data exploration.  A Shiny
> +application encapsulates the whole analysis.")
> +    (license license:expat)))
> +
>  (define-public r-pcamethods
>    (package
>      (name "r-pcamethods")
>
> base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
> -- 
> 2.37.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#57339] [PATCH] gnu: Add r-pcaexplorer.
>
>
>
>
> Date: 
>
> Tue, 23 Aug 2022 11:53:30 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.7; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---