bug#57338: closed ([PATCH] gnu: Add r-parathyroidse.)

[GNU bug Tracking System]

Your message dated Tue, 23 Aug 2022 11:53:52 +0200
with message-id <87sflnz3nm.fsf@elephly.net>
and subject line Re: [bug#57338] [PATCH] gnu: Add r-parathyroidse.
has caused the debbugs.gnu.org bug report #57338,
regarding [PATCH] gnu: Add r-parathyroidse.
to be marked as done.

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-- 
57338: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57338
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> --- Begin Message ---
>
>
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> Subject: 
>
> [PATCH] gnu: Add r-parathyroidse.
>
>
>
>
> Date: 
>
> Mon, 22 Aug 2022 12:33:19 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
> ---
>  gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
>  1 file changed, 24 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 7d2ca413e9..b4f880a080 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1541,6 +1541,30 @@ (define-public r-curatedtcgadata
>  across the entire multi-'omics experiment.")
>      (license license:artistic2.0)))
>  
> +(define-public r-parathyroidse
> +  (package
> +    (name "r-parathyroidse")
> +    (version "1.34.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "parathyroidSE" version
> +                                     'experiment))
> +              (sha256
> +               (base32
> +                "1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16"))))
> +    (properties `((upstream-name . "parathyroidSE")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-summarizedexperiment))
> +    (home-page "https://bioconductor.org/packages/parathyroidSE";)
> +    (synopsis "RangedSummarizedExperiment for RNA-Seq of parathyroid tumors")
> +    (description
> +     "This package provides @code{RangedSummarizedExperiment} objects of read
> +counts in genes and exonic parts for paired-end RNA-Seq data from experiments 
> on
> +primary cultures of parathyroid tumors.  The sequencing was performed on tumor
> +cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and 
> control).")
> +    ;; The author(s) mentions only LGPL without any specific version.
> +    (license license:lgpl2.1+)))
> +
>  (define-public r-tcgabiolinksgui-data
>    (package
>      (name "r-tcgabiolinksgui-data")
>
> base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
> -- 
> 2.37.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#57338] [PATCH] gnu: Add r-parathyroidse.
>
>
>
>
> Date: 
>
> Tue, 23 Aug 2022 11:53:52 +0200
>
>
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>
> User-agent: 
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> mu4e 1.8.7; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---