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Re: [Orgmode] [babel] org-babel-R and windows ?


From: Manish
Subject: Re: [Orgmode] [babel] org-babel-R and windows ?
Date: Tue, 12 Jan 2010 22:35:24 +0530

On Tue, Jan 12, 2010 at 8:26 PM, Giovanni Ridolfi wrote:
> d.tchin writes:
>
> Hi, d.tchin ,
>
>> I need help to be able to use org-babel functionality.
>> I use emacs 22.3.1 in windows XP and org-mode 6.34.
>>
>> I have the following instructions in .emacs
>>
>> (require 'org-install)
>> (require 'org-plot)
>> (require 'org-babel-init)
>> (require 'org-babel-R)         ;; requires R and ess-mode
>> (require 'org-babel-python)    ;; requires python, and python-mode
>> (require 'org-babel-ditaa)
>>
>> ESS module is loaded before :
>>
>> (load "~/emacs/emacs-22.3/site-lisp/ess-5.7.1/lisp/ess-site")
>>
>> I don't manage to get any output with R Software.
>>
>> Below you will find test I have done :
>>
>> #+srcname:trial
>> #+begin_src sh
>>   echo output
>> #+end_src
>>
>> #+results: trial
>> : output
>>
>> #+srcname:trial
>> #+begin_src R
>>   c(4,5,6,7,8,9)
>> #+end_src
>>
>> I manage to have shell output, but when I tried R procedure,
>> I have the following output in *Messages* buffer
>>
>> executing R source code block...
>> Syntaxe du nom de fichier, de répertoire ou de volume incorrecte.
> joking: "what does that mean in *English*, you French-centric guy?!"  ;-)
> ah,yes,  google translator is my friend:
>
> Syntax of the file name, directory or volume error.

I face the exact same problem on:
 - Windows XP SP 2
 - R 2.10.0
 - ESS 5.3.11
 - Emacs 23.1.1
 - bleeding edge Org.

> I suspect that R is not loaded/called correctly from org-babel

Ruby calls from Org babel work.  And R was configured the same way.
The temporary files are created in $TEMP but the out file is empty.

>
> + can you run R from emacs shell?

Yes.

> + is the R executable in the path?

Yes.

> + do you have all the backslashes defined correctly when you call the R 
> executable?

Yes.


-- 
Manish




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