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03/09: gnu: Add r-acsnminer.
From: |
Ricardo Wurmus |
Subject: |
03/09: gnu: Add r-acsnminer. |
Date: |
Mon, 21 Dec 2015 16:22:36 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 9fba89e8298303a94e098489d6a6806dbf25533b
Author: Ricardo Wurmus <address@hidden>
Date: Thu Dec 17 16:51:28 2015 +0100
gnu: Add r-acsnminer.
* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 files changed, 26 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 21b85db..2563021 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3140,6 +3140,32 @@ BLAST, KEGG, GenBank, MEDLINE and GO.")
;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
(license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))
+(define-public r-acsnminer
+ (package
+ (name "r-acsnminer")
+ (version "0.15.11")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "ACSNMineR" version))
+ (sha256
+ (base32
+ "1dl4drhjyazwm9wxlm8yfppwvvj4h6jxwmz8kfw5bxpb3jdnsqvy"))))
+ (properties `((upstream-name . "ACSNMineR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)))
+ (home-page "http://cran.r-project.org/web/packages/ACSNMineR")
+ (synopsis "Gene enrichment analysis")
+ (description
+ "This package provides tools to compute and represent gene set enrichment
+or depletion from your data based on pre-saved maps from the @dfn{Atlas of
+Cancer Signalling Networks} (ACSN) or user imported maps. The gene set
+enrichment can be run with hypergeometric test or Fisher exact test, and can
+use multiple corrections. Visualization of data can be done either by
+barplots or heatmaps.")
+ (license license:gpl2+)))
+
(define-public r-qtl
(package
(name "r-qtl")
- branch master updated (77bdb27 -> e2cd1d0), Ricardo Wurmus, 2015/12/21
- 01/09: gnu: Add r-gtable., Ricardo Wurmus, 2015/12/21
- 02/09: gnu: Add r-gridextra., Ricardo Wurmus, 2015/12/21
- 04/09: gnu: Add BiocGenerics., Ricardo Wurmus, 2015/12/21
- 05/09: gnu: Add S4Vectors., Ricardo Wurmus, 2015/12/21
- 03/09: gnu: Add r-acsnminer.,
Ricardo Wurmus <=
- 07/09: gnu: Add GenomeInfoDb., Ricardo Wurmus, 2015/12/21
- 06/09: gnu: Add IRanges., Ricardo Wurmus, 2015/12/21
- 08/09: gnu: Add XVector., Ricardo Wurmus, 2015/12/21
- 09/09: gnu: Add GenomicRanges., Ricardo Wurmus, 2015/12/21