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07/09: gnu: Add GenomeInfoDb.
From: |
Ricardo Wurmus |
Subject: |
07/09: gnu: Add GenomeInfoDb. |
Date: |
Mon, 21 Dec 2015 16:22:38 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit bf7764b74f6052bbb977b869efdcfbb8b6e9e588
Author: Ricardo Wurmus <address@hidden>
Date: Fri Dec 18 12:07:56 2015 +0100
gnu: Add GenomeInfoDb.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 files changed, 27 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cbc83dd..f4679cf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3245,6 +3245,33 @@ naming and share the same rich and consistent \"Vector
API\" as much as
possible.")
(license license:artistic2.0)))
+(define-public r-genomeinfodb
+ (package
+ (name "r-genomeinfodb")
+ (version "1.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomeInfoDb" version))
+ (sha256
+ (base32
+ "1j2n1v1mrw1fxn7cyffz112pm76wd6gy9q9qwlsfv3brbsqbvdbf"))))
+ (properties
+ `((upstream-name . "GenomeInfoDb")
+ (r-repository . bioconductor)))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/GenomeInfoDb")
+ (synopsis "Utilities for manipulating chromosome identifiers")
+ (description
+ "This package contains data and functions that define and allow
+translation between different chromosome sequence naming conventions (e.g.,
+\"chr1\" versus \"1\"), including a function that attempts to place sequence
+names in their natural, rather than lexicographic, order.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
- branch master updated (77bdb27 -> e2cd1d0), Ricardo Wurmus, 2015/12/21
- 01/09: gnu: Add r-gtable., Ricardo Wurmus, 2015/12/21
- 02/09: gnu: Add r-gridextra., Ricardo Wurmus, 2015/12/21
- 04/09: gnu: Add BiocGenerics., Ricardo Wurmus, 2015/12/21
- 05/09: gnu: Add S4Vectors., Ricardo Wurmus, 2015/12/21
- 03/09: gnu: Add r-acsnminer., Ricardo Wurmus, 2015/12/21
- 07/09: gnu: Add GenomeInfoDb.,
Ricardo Wurmus <=
- 06/09: gnu: Add IRanges., Ricardo Wurmus, 2015/12/21
- 08/09: gnu: Add XVector., Ricardo Wurmus, 2015/12/21
- 09/09: gnu: Add GenomicRanges., Ricardo Wurmus, 2015/12/21