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12/21: gnu: Add r-mast.
From: |
guix-commits |
Subject: |
12/21: gnu: Add r-mast. |
Date: |
Wed, 13 Mar 2019 08:18:12 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 925fcdbb7943f04e1f0a8ac79c236d3543a9945b
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 12:53:03 2019 +0100
gnu: Add r-mast.
* gnu/packages/bioconductor.scm (r-mast): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index adc0e84..782b769 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1932,3 +1932,36 @@ performance metrics for evaluation of ranking and binary
classification (assignment) methods. It also contains a Shiny application for
interactive exploration of results.")
(license license:gpl2+)))
+
+(define-public r-mast
+ (package
+ (name "r-mast")
+ (version "1.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MAST" version))
+ (sha256
+ (base32
+ "0rhx655dza0m6yg9jcfz2nmxqahvxx2l91kqgyp7qai0bzz9d9ix"))))
+ (properties `((upstream-name . "MAST")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-data-table" ,r-data-table)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-plyr" ,r-plyr)
+ ("r-progress" ,r-progress)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-stringr" ,r-stringr)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://github.com/RGLab/MAST/")
+ (synopsis "Model-based analysis of single cell transcriptomics")
+ (description
+ "This package provides methods and models for handling zero-inflated
+single cell assay data.")
+ (license license:gpl2+)))
- branch master updated (2b6ab17 -> 0fbaf19), guix-commits, 2019/03/13
- 06/21: gnu: Add r-shinyjs., guix-commits, 2019/03/13
- 01/21: gnu: Add r-nbpseq., guix-commits, 2019/03/13
- 02/21: gnu: Add r-ebseq., guix-commits, 2019/03/13
- 11/21: gnu: Add r-icobra., guix-commits, 2019/03/13
- 12/21: gnu: Add r-mast.,
guix-commits <=
- 05/21: gnu: Add r-shinybs., guix-commits, 2019/03/13
- 20/21: gnu: Add r-bumphunter., guix-commits, 2019/03/13
- 09/21: gnu: Add r-nor1mix., guix-commits, 2019/03/13
- 07/21: gnu: Add r-colourpicker., guix-commits, 2019/03/13
- 04/21: gnu: Add r-ihw., guix-commits, 2019/03/13
- 08/21: gnu: Add r-ggextra., guix-commits, 2019/03/13
- 10/21: gnu: Add r-beanplot., guix-commits, 2019/03/13
- 15/21: gnu: Add r-scdd., guix-commits, 2019/03/13
- 16/21: gnu: Add r-scone., guix-commits, 2019/03/13
- 18/21: gnu: Add r-illuminaio., guix-commits, 2019/03/13