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19/21: gnu: Add r-siggenes.
From: |
guix-commits |
Subject: |
19/21: gnu: Add r-siggenes. |
Date: |
Wed, 13 Mar 2019 08:18:14 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f4eac09653ddebbe57e16824da42aad04af35632
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 13:16:22 2019 +0100
gnu: Add r-siggenes.
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c188dac..b29ae9d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2175,3 +2175,28 @@ the bridge between GEO and BioConductor.")
"This package provides tools for parsing Illumina's microarray output
files, including IDAT.")
(license license:gpl2)))
+
+(define-public r-siggenes
+ (package
+ (name "r-siggenes")
+ (version "1.56.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "siggenes" version))
+ (sha256
+ (base32
+ "0cjlb5r04x15xkhk00i3wvpx21kj0k29pn0mj3whwqk31zznnk1b"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-multtest" ,r-multtest)))
+ (home-page "https://bioconductor.org/packages/siggenes/")
+ (synopsis
+ "Multiple testing using SAM and Efron's empirical Bayes approaches")
+ (description
+ "This package provides tools for the identification of differentially
+expressed genes and estimation of the @dfn{False Discovery Rate} (FDR) using
+both the Significance Analysis of Microarrays (SAM) and the @dfn{Empirical
+Bayes Analyses of Microarrays} (EBAM).")
+ (license license:lgpl2.0+)))
- 05/21: gnu: Add r-shinybs., (continued)
- 05/21: gnu: Add r-shinybs., guix-commits, 2019/03/13
- 20/21: gnu: Add r-bumphunter., guix-commits, 2019/03/13
- 09/21: gnu: Add r-nor1mix., guix-commits, 2019/03/13
- 07/21: gnu: Add r-colourpicker., guix-commits, 2019/03/13
- 04/21: gnu: Add r-ihw., guix-commits, 2019/03/13
- 08/21: gnu: Add r-ggextra., guix-commits, 2019/03/13
- 10/21: gnu: Add r-beanplot., guix-commits, 2019/03/13
- 15/21: gnu: Add r-scdd., guix-commits, 2019/03/13
- 16/21: gnu: Add r-scone., guix-commits, 2019/03/13
- 18/21: gnu: Add r-illuminaio., guix-commits, 2019/03/13
- 19/21: gnu: Add r-siggenes.,
guix-commits <=
- 03/21: gnu: Add r-lpsymphony., guix-commits, 2019/03/13
- 13/21: gnu: Add r-monocle., guix-commits, 2019/03/13
- 17/21: gnu: Add r-geoquery., guix-commits, 2019/03/13
- 14/21: gnu: Add r-noiseq., guix-commits, 2019/03/13
- 21/21: gnu: Add r-minfi., guix-commits, 2019/03/13