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14/21: gnu: Add r-noiseq.
From: |
guix-commits |
Subject: |
14/21: gnu: Add r-noiseq. |
Date: |
Wed, 13 Mar 2019 08:18:13 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 6213e4418557dfece72c8aa12468490e68618d3b
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 13:04:11 2019 +0100
gnu: Add r-noiseq.
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index af72593..15173e1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2020,3 +2020,30 @@ differential expression analysis, clustering,
visualization, and other useful
tasks on single cell expression data. It is designed to work with RNA-Seq and
qPCR data, but could be used with other types as well.")
(license license:artistic2.0)))
+
+(define-public r-noiseq
+ (package
+ (name "r-noiseq")
+ (version "2.26.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "NOISeq" version))
+ (sha256
+ (base32
+ "1wyhhi9ydlbjlz427093mdp5ppby77n37w5c2iyxlpsdk2m2nqsn"))))
+ (properties `((upstream-name . "NOISeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-matrix" ,r-matrix)))
+ (home-page "https://bioconductor.org/packages/NOISeq")
+ (synopsis "Exploratory analysis and differential expression for RNA-seq
data")
+ (description
+ "This package provides tools to support the analysis of RNA-seq
+expression data or other similar kind of data. It provides exploratory plots
+to evaluate saturation, count distribution, expression per chromosome, type of
+detected features, features length, etc. It also supports the analysis of
+differential expression between two experimental conditions with no parametric
+assumptions.")
+ (license license:artistic2.0)))
- 04/21: gnu: Add r-ihw., (continued)
- 04/21: gnu: Add r-ihw., guix-commits, 2019/03/13
- 08/21: gnu: Add r-ggextra., guix-commits, 2019/03/13
- 10/21: gnu: Add r-beanplot., guix-commits, 2019/03/13
- 15/21: gnu: Add r-scdd., guix-commits, 2019/03/13
- 16/21: gnu: Add r-scone., guix-commits, 2019/03/13
- 18/21: gnu: Add r-illuminaio., guix-commits, 2019/03/13
- 19/21: gnu: Add r-siggenes., guix-commits, 2019/03/13
- 03/21: gnu: Add r-lpsymphony., guix-commits, 2019/03/13
- 13/21: gnu: Add r-monocle., guix-commits, 2019/03/13
- 17/21: gnu: Add r-geoquery., guix-commits, 2019/03/13
- 14/21: gnu: Add r-noiseq.,
guix-commits <=
- 21/21: gnu: Add r-minfi., guix-commits, 2019/03/13