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03/14: gnu: Add r-somaticsignatures.
From: |
guix-commits |
Subject: |
03/14: gnu: Add r-somaticsignatures. |
Date: |
Sat, 30 Mar 2019 03:55:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 28098414d0e1455110b9ee8a500255f93dc34e20
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 20:28:38 2019 +0100
gnu: Add r-somaticsignatures.
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d3ffd41..78fd5a9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3685,3 +3685,40 @@ dimensional data which are represented as tracks
describe different features
from different aspects. This package provides high flexibility to arrange
genomic categories and to add self-defined graphics in the plot.")
(license license:expat)))
+
+(define-public r-somaticsignatures
+ (package
+ (name "r-somaticsignatures")
+ (version "2.18.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "SomaticSignatures" version))
+ (sha256
+ (base32
+ "013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02"))))
+ (properties
+ `((upstream-name . "SomaticSignatures")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggbio" ,r-ggbio)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iranges" ,r-iranges)
+ ("r-nmf" ,r-nmf)
+ ("r-pcamethods" ,r-pcamethods)
+ ("r-proxy" ,r-proxy)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://github.com/juliangehring/SomaticSignatures")
+ (synopsis "Somatic signatures")
+ (description
+ "This package identifies mutational signatures of @dfn{single nucleotide
+variants} (SNVs). It provides a infrastructure related to the methodology
+described in Nik-Zainal (2012, Cell), with flexibility in the matrix
+decomposition algorithms.")
+ (license license:expat)))
- branch master updated (bc91562 -> ec12e53), guix-commits, 2019/03/30
- 04/14: gnu: Add r-yapsa., guix-commits, 2019/03/30
- 03/14: gnu: Add r-somaticsignatures.,
guix-commits <=
- 05/14: gnu: Add r-gcrma., guix-commits, 2019/03/30
- 02/14: gnu: Add r-gtrellis., guix-commits, 2019/03/30
- 08/14: gnu: Add r-downloader., guix-commits, 2019/03/30
- 11/14: gnu: Add r-roar., guix-commits, 2019/03/30
- 07/14: gnu: Add r-yaqcaffy., guix-commits, 2019/03/30
- 01/14: gnu: Add r-pmcmr., guix-commits, 2019/03/30
- 10/14: gnu: Add r-yarn., guix-commits, 2019/03/30
- 06/14: gnu: Add r-simpleaffy., guix-commits, 2019/03/30
- 09/14: gnu: Add r-quantro., guix-commits, 2019/03/30
- 12/14: gnu: Add r-xbseq., guix-commits, 2019/03/30