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10/14: gnu: Add r-yarn.
From: |
guix-commits |
Subject: |
10/14: gnu: Add r-yarn. |
Date: |
Sat, 30 Mar 2019 03:55:59 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 98a2af31a8066eff780a71a6366749cad5d3d580
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 22:30:47 2019 +0100
gnu: Add r-yarn.
* gnu/packages/bioconductor.scm (r-yarn): New variable.
---
gnu/packages/bioconductor.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6b11b47..b0c1fb0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3879,3 +3879,38 @@ Tumor / Normal status) must also be provided because the
test assesses if
there are global differences in the distributions between the user-defined
groups.")
(license license:gpl3+)))
+
+(define-public r-yarn
+ (package
+ (name "r-yarn")
+ (version "1.8.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "yarn" version))
+ (sha256
+ (base32
+ "0c84x1zq34hadpsyaa873r8kg0jcxp09c2z63377hlmhsll90l7s"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biomart" ,r-biomart)
+ ("r-downloader" ,r-downloader)
+ ("r-edger" ,r-edger)
+ ("r-gplots" ,r-gplots)
+ ("r-limma" ,r-limma)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-quantro" ,r-quantro)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-readr" ,r-readr)))
+ (home-page "https://bioconductor.org/packages/yarn/")
+ (synopsis "Robust multi-condition RNA-Seq preprocessing and normalization")
+ (description
+ "Expedite large RNA-Seq analyses using a combination of previously
+developed tools. YARN is meant to make it easier for the user in performing
+basic mis-annotation quality control, filtering, and condition-aware
+normalization. YARN leverages many Bioconductor tools and statistical
+techniques to account for the large heterogeneity and sparsity found in very
+large RNA-seq experiments.")
+ (license license:artistic2.0)))
- branch master updated (bc91562 -> ec12e53), guix-commits, 2019/03/30
- 04/14: gnu: Add r-yapsa., guix-commits, 2019/03/30
- 03/14: gnu: Add r-somaticsignatures., guix-commits, 2019/03/30
- 05/14: gnu: Add r-gcrma., guix-commits, 2019/03/30
- 02/14: gnu: Add r-gtrellis., guix-commits, 2019/03/30
- 08/14: gnu: Add r-downloader., guix-commits, 2019/03/30
- 11/14: gnu: Add r-roar., guix-commits, 2019/03/30
- 07/14: gnu: Add r-yaqcaffy., guix-commits, 2019/03/30
- 01/14: gnu: Add r-pmcmr., guix-commits, 2019/03/30
- 10/14: gnu: Add r-yarn.,
guix-commits <=
- 06/14: gnu: Add r-simpleaffy., guix-commits, 2019/03/30
- 09/14: gnu: Add r-quantro., guix-commits, 2019/03/30
- 12/14: gnu: Add r-xbseq., guix-commits, 2019/03/30
- 13/14: gnu: Add r-massspecwavelet., guix-commits, 2019/03/30
- 14/14: gnu: Add r-xcms., guix-commits, 2019/03/30