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02/265: guix: Upgrade to Bioconductor 3.10.
From: |
guix-commits |
Subject: |
02/265: guix: Upgrade to Bioconductor 3.10. |
Date: |
Sun, 15 Dec 2019 09:39:52 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit f431d5e299b9e00c22b02e9d5464e6d4196561ba
Author: Ricardo Wurmus <address@hidden>
Date: Sat Dec 14 15:54:50 2019 +0100
guix: Upgrade to Bioconductor 3.10.
* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10.
* guix/import/cran.scm (%bioconductor-version): Same.
---
guix/build-system/r.scm | 2 +-
guix/import/cran.scm | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm
index dd2a9fe..2d32876 100644
--- a/guix/build-system/r.scm
+++ b/guix/build-system/r.scm
@@ -59,7 +59,7 @@ release corresponding to NAME and VERSION."
"/src/contrib/"
name "_" version ".tar.gz")
;; TODO: use %bioconductor-version from (guix import cran)
- (string-append "https://bioconductor.org/packages/3.9"
+ (string-append "https://bioconductor.org/packages/3.10"
type-url-part
"/src/contrib/Archive/"
name "_" version ".tar.gz"))))
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 0aee0c7..f3f1747 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -133,9 +133,9 @@ package definition."
(define %cran-url "https://cran.r-project.org/web/packages/")
(define %bioconductor-url "https://bioconductor.org/packages/")
-;; The latest Bioconductor release is 3.9. Bioconductor packages should be
+;; The latest Bioconductor release is 3.10. Bioconductor packages should be
;; updated together.
-(define %bioconductor-version "3.9")
+(define %bioconductor-version "3.10")
(define* (bioconductor-packages-list-url #:optional type)
(string-append "https://bioconductor.org/packages/"
- branch master updated (58c3a4f -> 6e10ac0), guix-commits, 2019/12/15
- 01/265: gnu: Add r-idpmisc., guix-commits, 2019/12/15
- 03/265: gnu: Add r-qqman., guix-commits, 2019/12/15
- 04/265: gnu: Add r-biocversion., guix-commits, 2019/12/15
- 06/265: gnu: Add r-cytolib., guix-commits, 2019/12/15
- 02/265: guix: Upgrade to Bioconductor 3.10.,
guix-commits <=
- 05/265: gnu: Add r-multidataset., guix-commits, 2019/12/15
- 07/265: gnu: Add r-ncdfflow., guix-commits, 2019/12/15
- 08/265: gnu: Add r-ggcyto., guix-commits, 2019/12/15
- 09/265: gnu: Add r-ggplot-multistats., guix-commits, 2019/12/15
- 10/265: gnu: Add r-knn-covertree., guix-commits, 2019/12/15
- 13/265: gnu: Add r-flowviz., guix-commits, 2019/12/15
- 12/265: gnu: r-rgraphviz: Update to 2.30.0., guix-commits, 2019/12/15
- 18/265: gnu: Add r-opencyto., guix-commits, 2019/12/15
- 23/265: gnu: r-affycompatible: Update to 1.46.0., guix-commits, 2019/12/15
- 15/265: gnu: Add r-rprotobuflib., guix-commits, 2019/12/15