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14/265: gnu: Add r-flowclust.
From: |
guix-commits |
Subject: |
14/265: gnu: Add r-flowclust. |
Date: |
Sun, 15 Dec 2019 09:39:54 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c8ab9eb1b4d9af156d8008d43e6a7520e8718683
Author: Ricardo Wurmus <address@hidden>
Date: Sun Dec 15 14:24:42 2019 +0100
gnu: Add r-flowclust.
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cbb79da..c59d799 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5434,6 +5434,43 @@ statistics to the plot.")
"This package provides visualization tools for flow cytometry data.")
(license license:artistic2.0)))
+(define-public r-flowclust
+ (package
+ (name "r-flowclust")
+ (version "3.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "flowClust" version))
+ (sha256
+ (base32
+ "0k4bgc4mf512njfdfg5ld9l7slgfxyfh766jab87j96zrrgcnj8s"))))
+ (properties `((upstream-name . "flowClust")))
+ (build-system r-build-system)
+ (arguments
+ `(#:configure-flags
+ (list "--configure-args=--enable-bundled-gsl=no")))
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-clue" ,r-clue)
+ ("r-corpcor" ,r-corpcor)
+ ("r-ellipse" ,r-ellipse)
+ ("r-flowcore" ,r-flowcore)
+ ("r-flowviz" ,r-flowviz)
+ ("r-graph" ,r-graph)
+ ("r-mnormt" ,r-mnormt)))
+ (inputs
+ `(("gsl" ,gsl)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (home-page "https://bioconductor.org/packages/flowClust")
+ (synopsis "Clustering for flow cytometry")
+ (description
+ "This package provides robust model-based clustering using a t-mixture
+model with Box-Cox transformation.")
+ (license license:artistic2.0)))
+
(define-public r-flowsom
(package
(name "r-flowsom")
- 130/265: gnu: r-seqlogo: Update to 1.52.0., (continued)
- 130/265: gnu: r-seqlogo: Update to 1.52.0., guix-commits, 2019/12/15
- 138/265: gnu: r-genomicalignments: Update to 1.22.1., guix-commits, 2019/12/15
- 109/265: gnu: r-complexheatmap: Update to 2.2.0., guix-commits, 2019/12/15
- 124/265: gnu: r-mutationalpatterns: Update to 1.12.0., guix-commits, 2019/12/15
- 136/265: gnu: r-genomicfeatures: Update to 1.38.0., guix-commits, 2019/12/15
- 142/265: gnu: r-biostrings: Update to 2.54.0., guix-commits, 2019/12/15
- 156/265: gnu: r-biocstyle: Update to 2.14.2., guix-commits, 2019/12/15
- 162/265: gnu: r-category: Update to 2.52.1., guix-commits, 2019/12/15
- 17/265: gnu: Add r-flowstats., guix-commits, 2019/12/15
- 11/265: gnu: r-preprocesscore: Update to 1.48.0., guix-commits, 2019/12/15
- 14/265: gnu: Add r-flowclust.,
guix-commits <=
- 21/265: gnu: r-biocgenerics: Update to 0.32.0., guix-commits, 2019/12/15
- 26/265: gnu: r-affxparser: Update to 1.58.0., guix-commits, 2019/12/15
- 30/265: gnu: r-reportingtools: Update to 2.26.0., guix-commits, 2019/12/15
- 28/265: gnu: r-hpar: Update to 1.28.0., guix-commits, 2019/12/15
- 32/265: gnu: r-oligoclasses: Update to 1.48.0., guix-commits, 2019/12/15
- 37/265: gnu: r-multtest: Update to 2.42.0., guix-commits, 2019/12/15
- 36/265: gnu: r-ripseeker: Update to 1.26.0., guix-commits, 2019/12/15
- 40/265: gnu: r-marray: Update to 1.64.0., guix-commits, 2019/12/15
- 43/265: gnu: r-qdnaseq: Update to 1.22.0., guix-commits, 2019/12/15
- 44/265: gnu: r-bayseq: Update to 2.20.0., guix-commits, 2019/12/15