53/296: gnu: r-rcas: Update to 1.14.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3c53617efc25e191e0246b6254abd7b6dedc86c0
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 12 16:19:30 2020 +0200

    gnu: r-rcas: Update to 1.14.0.
    
    * gnu/packages/bioinformatics.scm (r-rcas): Update to 1.14.0.
    [propagated-inputs]: Remove r-annotationdbi, r-biomart, r-dbi, r-knitr,
    r-motifrg, r-org-hs-eg-db, and r-topgo; add r-bsgenome, r-gprofiler2,
    r-iranges, and r-ranger.
    [native-inputs]: Add r-knitr.
---
 gnu/packages/bioinformatics.scm | 19 +++++++++----------
 1 file changed, 9 insertions(+), 10 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f604daf..6e1c92c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8694,24 +8694,22 @@ paired-end data.")
 (define-public r-rcas
   (package
     (name "r-rcas")
-    (version "1.12.0")
+    (version "1.14.0")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "RCAS" version))
               (sha256
                (base32
-                "1s3gvvxi1029d1vfwnjh21nnw3mlx08kcwz63891hml9y850cvsn"))))
+                "0f812pgv3ys1zv4n9sqkgm01hj4cdd0i0h85dqbhkwd94zl6cavl"))))
     (properties `((upstream-name . "RCAS")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-annotationdbi" ,r-annotationdbi)
-       ("r-biocgenerics" ,r-biocgenerics)
-       ("r-biomart" ,r-biomart)
+     `(("r-biocgenerics" ,r-biocgenerics)
        ("r-biostrings" ,r-biostrings)
+       ("r-bsgenome" ,r-bsgenome)
        ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
        ("r-cowplot" ,r-cowplot)
        ("r-data-table" ,r-data-table)
-       ("r-dbi" ,r-dbi)
        ("r-dt" ,r-dt)
        ("r-genomation" ,r-genomation)
        ("r-genomeinfodb" ,r-genomeinfodb)
@@ -8719,20 +8717,21 @@ paired-end data.")
        ("r-genomicranges" ,r-genomicranges)
        ("r-ggplot2" ,r-ggplot2)
        ("r-ggseqlogo" ,r-ggseqlogo)
-       ("r-knitr" ,r-knitr)
-       ("r-motifrg" ,r-motifrg)
-       ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+       ("r-gprofiler2" ,r-gprofiler2)
+       ("r-iranges" ,r-iranges)
        ("r-pbapply" ,r-pbapply)
        ("r-pheatmap" ,r-pheatmap)
        ("r-plotly" ,r-plotly)
        ("r-plotrix" ,r-plotrix)
        ("r-proxy" ,r-proxy)
+       ("r-ranger" ,r-ranger)
        ("r-rsqlite" ,r-rsqlite)
        ("r-rtracklayer" ,r-rtracklayer)
        ("r-rmarkdown" ,r-rmarkdown)
        ("r-s4vectors" ,r-s4vectors)
-       ("r-topgo" ,r-topgo)
        ("pandoc" ,ghc-pandoc)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (synopsis "RNA-centric annotation system")
     (description
      "RCAS aims to be a standalone RNA-centric annotation system that provides