05/16: gnu: r-qtl: Move to (gnu packages cran).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 496a52dc410e287aa2bd03e962fdc110cfb2a1cc
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Sep 11 20:08:42 2020 +0200

    gnu: r-qtl: Move to (gnu packages cran).
    
    * gnu/packages/bioinformatics.scm (r-qtl): Move from here...
    * gnu/packages/cran.scm (r-qtl): ...to here.
    
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioinformatics.scm | 25 -------------------------
 gnu/packages/cran.scm           | 26 ++++++++++++++++++++++++++
 2 files changed, 26 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cab3df2..ae728f0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8510,31 +8510,6 @@ Stephens (1990).")
 throughput genetic sequencing data sets using regression methods.")
     (license license:artistic2.0)))
 
-(define-public r-qtl
- (package
-  (name "r-qtl")
-  (version "1.46-2")
-  (source
-   (origin
-    (method url-fetch)
-    (uri (string-append "mirror://cran/src/contrib/qtl_"
-                        version ".tar.gz"))
-    (sha256
-     (base32
-      "0rbwcnvyy96gq1dsgpxx03pv423qya26h6ws5y0blj3blfdmj83a"))))
-  (build-system r-build-system)
-  (home-page "https://rqtl.org/";)
-  (synopsis "R package for analyzing QTL experiments in genetics")
-  (description "R/qtl is an extension library for the R statistics
-system.  It is used to analyze experimental crosses for identifying
-genes contributing to variation in quantitative traits (so-called
-quantitative trait loci, QTLs).
-
-Using a hidden Markov model, R/qtl estimates genetic maps, to
-identify genotyping errors, and to perform single-QTL and two-QTL,
-two-dimensional genome scans.")
-  (license license:gpl3)))
-
 (define-public r-qtl2
   (package
     (name "r-qtl2")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0d10793..980ad17 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus 
<rekado@elephly.net>
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
 ;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -24330,3 +24331,28 @@ are tests where the test statistic is the sum of the 
product of a
 covariate (usually group indicator) and the scores.")
     ;; Any version of the GPL
     (license license:gpl2+)))
+
+(define-public r-qtl
+ (package
+  (name "r-qtl")
+  (version "1.46-2")
+  (source
+   (origin
+    (method url-fetch)
+    (uri (string-append "mirror://cran/src/contrib/qtl_"
+                        version ".tar.gz"))
+    (sha256
+     (base32
+      "0rbwcnvyy96gq1dsgpxx03pv423qya26h6ws5y0blj3blfdmj83a"))))
+  (build-system r-build-system)
+  (home-page "https://rqtl.org/";)
+  (synopsis "R package for analyzing QTL experiments in genetics")
+  (description "R/qtl is an extension library for the R statistics
+system.  It is used to analyze experimental crosses for identifying
+genes contributing to variation in quantitative traits (so-called
+quantitative trait loci, QTLs).
+
+Using a hidden Markov model, R/qtl estimates genetic maps, to
+identify genotyping errors, and to perform single-QTL and two-QTL,
+two-dimensional genome scans.")
+  (license license:gpl3)))