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10/16: gnu: r-phangorn: Move to (gnu packages cran).
From: |
guix-commits |
Subject: |
10/16: gnu: r-phangorn: Move to (gnu packages cran). |
Date: |
Fri, 11 Sep 2020 16:04:30 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 415aa8a583a018ed2dd7e97a2045e7bd03a67674
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Sep 11 20:08:49 2020 +0200
gnu: r-phangorn: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioinformatics.scm | 28 ----------------------------
gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a650509..bec6c1d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10936,34 +10936,6 @@ are optimized per data type and for subsetted
calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))
-(define-public r-phangorn
- (package
- (name "r-phangorn")
- (version "2.5.5")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "phangorn" version))
- (sha256
- (base32
- "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-ape" ,r-ape)
- ("r-fastmatch" ,r-fastmatch)
- ("r-igraph" ,r-igraph)
- ("r-magrittr" ,r-magrittr)
- ("r-matrix" ,r-matrix)
- ("r-quadprog" ,r-quadprog)
- ("r-rcpp" ,r-rcpp)))
- (home-page "https://github.com/KlausVigo/phangorn")
- (synopsis "Phylogenetic analysis in R")
- (description
- "Phangorn is a package for phylogenetic analysis in R. It supports
-estimation of phylogenetic trees and networks using Maximum Likelihood,
-Maximum Parsimony, distance methods and Hadamard conjugation.")
- (license license:gpl2+)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 10d480a..a3808e9 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24496,3 +24496,31 @@ dimensionality reduction; PCA, ICA, t-SNE, standard
unsupervised clustering
algorithms; density clustering, hierarchical clustering, k-means, and the
discovery of differentially expressed genes and markers.")
(license license:gpl3)))
+
+(define-public r-phangorn
+ (package
+ (name "r-phangorn")
+ (version "2.5.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "phangorn" version))
+ (sha256
+ (base32
+ "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-fastmatch" ,r-fastmatch)
+ ("r-igraph" ,r-igraph)
+ ("r-magrittr" ,r-magrittr)
+ ("r-matrix" ,r-matrix)
+ ("r-quadprog" ,r-quadprog)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/KlausVigo/phangorn")
+ (synopsis "Phylogenetic analysis in R")
+ (description
+ "Phangorn is a package for phylogenetic analysis in R. It supports
+estimation of phylogenetic trees and networks using Maximum Likelihood,
+Maximum Parsimony, distance methods and Hadamard conjugation.")
+ (license license:gpl2+)))
- 01/16: gnu: r-codedepends: Comment why it is in bioconductor.scm., (continued)
- 01/16: gnu: r-codedepends: Comment why it is in bioconductor.scm., guix-commits, 2020/09/11
- 02/16: gnu: r-adaptivesparsity: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 03/16: gnu: r-diffusionmap: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 07/16: gnu: r-seqminer: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 06/16: gnu: r-qtl2: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 09/16: gnu: r-seurat: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 11/16: gnu: r-diversitree: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 04/16: gnu: r-igraph: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 05/16: gnu: r-qtl: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 08/16: gnu: r-maldiquant: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 10/16: gnu: r-phangorn: Move to (gnu packages cran).,
guix-commits <=
- 12/16: gnu: r-absfiltergsea: Move to (gnu packages cran)., guix-commits, 2020/09/11
- 13/16: gnu: r-qtl: Correct indentation., guix-commits, 2020/09/11
- 14/16: gnu: r-qtl: Use CRAN-URI., guix-commits, 2020/09/11
- 15/16: gnu: r-adaptivesparsity: Fix case of "Gaussian"., guix-commits, 2020/09/11
- 16/16: gnu: r-adaptivesparsity: End build phase on #T., guix-commits, 2020/09/11