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04/10: gnu: r-annotationforge: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
04/10: gnu: r-annotationforge: Move to (gnu packages bioconductor). |
Date: |
Fri, 12 Mar 2021 08:53:09 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit ff92c2873c0c8ab9fa6e90020d656aac47dfb088
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Mon Mar 8 18:57:57 2021 +0100
gnu: r-annotationforge: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 32 --------------------------------
2 files changed, 32 insertions(+), 32 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0c36b01..c698178 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1487,6 +1487,38 @@ structure.")
microarrays.")
(license license:artistic2.0)))
+(define-public r-annotationforge
+ (package
+ (name "r-annotationforge")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationForge" version))
+ (sha256
+ (base32
+ "0y3820dkvwz09wlmz9drx6gqpsr9cwppaiz40zafwfxbz65y8px7"))))
+ (properties
+ `((upstream-name . "AnnotationForge")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-rcurl" ,r-rcurl)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xml" ,r-xml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/AnnotationForge")
+ (synopsis "Code for building annotation database packages")
+ (description
+ "This package provides code for generating Annotation packages and their
+databases. Packages produced are intended to be used with AnnotationDbi.")
+ (license license:artistic2.0)))
+
(define-public r-deseq2
(package
(name "r-deseq2")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4137287..5751585 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7387,38 +7387,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-annotationforge
- (package
- (name "r-annotationforge")
- (version "1.32.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "AnnotationForge" version))
- (sha256
- (base32
- "0y3820dkvwz09wlmz9drx6gqpsr9cwppaiz40zafwfxbz65y8px7"))))
- (properties
- `((upstream-name . "AnnotationForge")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-dbi" ,r-dbi)
- ("r-rcurl" ,r-rcurl)
- ("r-rsqlite" ,r-rsqlite)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xml" ,r-xml)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/AnnotationForge")
- (synopsis "Code for building annotation database packages")
- (description
- "This package provides code for generating Annotation packages and their
-databases. Packages produced are intended to be used with AnnotationDbi.")
- (license license:artistic2.0)))
-
(define-public r-rbgl
(package
(name "r-rbgl")
- branch master updated (323aec6 -> df6b3c2), guix-commits, 2021/03/12
- 01/10: gnu: r-genefilter: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 02/10: gnu: r-deseq2: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 03/10: gnu: r-dexseq: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 04/10: gnu: r-annotationforge: Move to (gnu packages bioconductor).,
guix-commits <=
- 05/10: gnu: r-rbgl: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 07/10: gnu: r-category: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 06/10: gnu: r-gseabase: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 08/10: gnu: r-gostats: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 09/10: gnu: r-shortread: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 10/10: gnu: r-systempiper: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12