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01/11: gnu: r-limma: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
01/11: gnu: r-limma: Move to (gnu packages bioconductor). |
Date: |
Mon, 15 Mar 2021 18:32:40 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 821e6439212f8e94580674eaaff2ce6752cd3b18
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Mon Mar 15 19:08:55 2021 +0100
gnu: r-limma: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
---
gnu/packages/bioconductor.scm | 19 +++++++++++++++++++
gnu/packages/bioinformatics.scm | 19 -------------------
2 files changed, 19 insertions(+), 19 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d611f3a..379b6c3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1850,6 +1850,25 @@ Enrichment Analysis} (GSEA).")
the Human Protein Atlas project.")
(license license:artistic2.0)))
+(define-public r-limma
+ (package
+ (name "r-limma")
+ (version "3.46.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "limma" version))
+ (sha256
+ (base32
+ "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz"))))
+ (build-system r-build-system)
+ (home-page "http://bioinf.wehi.edu.au/limma")
+ (synopsis "Package for linear models for microarray and RNA-seq data")
+ (description "This package can be used for the analysis of gene expression
+studies, especially the use of linear models for analysing designed experiments
+and the assessment of differential expression. The analysis methods apply to
+different technologies, including microarrays, RNA-seq, and quantitative PCR.")
+ (license license:gpl2+)))
+
(define-public r-rbgl
(package
(name "r-rbgl")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d9afe2c..9774b44 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,25 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-limma
- (package
- (name "r-limma")
- (version "3.46.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "limma" version))
- (sha256
- (base32
- "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz"))))
- (build-system r-build-system)
- (home-page "http://bioinf.wehi.edu.au/limma")
- (synopsis "Package for linear models for microarray and RNA-seq data")
- (description "This package can be used for the analysis of gene expression
-studies, especially the use of linear models for analysing designed experiments
-and the assessment of differential expression. The analysis methods apply to
-different technologies, including microarrays, RNA-seq, and quantitative PCR.")
- (license license:gpl2+)))
-
(define-public r-xvector
(package
(name "r-xvector")
- branch master updated (74fdd0f -> 8f9fd9b), guix-commits, 2021/03/15
- 01/11: gnu: r-limma: Move to (gnu packages bioconductor).,
guix-commits <=
- 02/11: gnu: r-xvector: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 06/11: gnu: r-biomart: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 07/11: gnu: r-biocparallel: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 03/11: gnu: r-genomicranges: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 04/11: gnu: r-biobase: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 05/11: gnu: r-annotationdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 08/11: gnu: r-biostrings: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 09/11: gnu: r-rsamtools: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 11/11: gnu: r-biocparallel: Build reproducibly., guix-commits, 2021/03/15
- 10/11: gnu: r-delayedarray: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15