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04/11: gnu: r-biobase: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
04/11: gnu: r-biobase: Move to (gnu packages bioconductor). |
Date: |
Mon, 15 Mar 2021 18:32:41 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 457de7f401300085066a0426068fe75f8df85943
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Mon Mar 15 19:08:58 2021 +0100
gnu: r-biobase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
---
gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 22 ----------------------
2 files changed, 22 insertions(+), 22 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ec273ca..b730884 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1570,6 +1570,28 @@ microarrays.")
databases. Packages produced are intended to be used with AnnotationDbi.")
(license license:artistic2.0)))
+(define-public r-biobase
+ (package
+ (name "r-biobase")
+ (version "2.50.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Biobase" version))
+ (sha256
+ (base32
+ "11kgc4flywlm3i18603558l8ksv91c24vkc5fnnbcd375i2dhhd4"))))
+ (properties
+ `((upstream-name . "Biobase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://bioconductor.org/packages/Biobase")
+ (synopsis "Base functions for Bioconductor")
+ (description
+ "This package provides functions that are needed by many other packages
+on Bioconductor or which replace R functions.")
+ (license license:artistic2.0)))
+
(define-public r-category
(package
(name "r-category")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4889c14..b73862f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,28 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-biobase
- (package
- (name "r-biobase")
- (version "2.50.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "Biobase" version))
- (sha256
- (base32
- "11kgc4flywlm3i18603558l8ksv91c24vkc5fnnbcd375i2dhhd4"))))
- (properties
- `((upstream-name . "Biobase")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)))
- (home-page "https://bioconductor.org/packages/Biobase")
- (synopsis "Base functions for Bioconductor")
- (description
- "This package provides functions that are needed by many other packages
-on Bioconductor or which replace R functions.")
- (license license:artistic2.0)))
-
(define-public r-annotationdbi
(package
(name "r-annotationdbi")
- branch master updated (74fdd0f -> 8f9fd9b), guix-commits, 2021/03/15
- 01/11: gnu: r-limma: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 02/11: gnu: r-xvector: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 06/11: gnu: r-biomart: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 07/11: gnu: r-biocparallel: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 03/11: gnu: r-genomicranges: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 04/11: gnu: r-biobase: Move to (gnu packages bioconductor).,
guix-commits <=
- 05/11: gnu: r-annotationdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 08/11: gnu: r-biostrings: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 09/11: gnu: r-rsamtools: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15
- 11/11: gnu: r-biocparallel: Build reproducibly., guix-commits, 2021/03/15
- 10/11: gnu: r-delayedarray: Move to (gnu packages bioconductor)., guix-commits, 2021/03/15