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16/54: gnu: r-aroma-light: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
16/54: gnu: r-aroma-light: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:07 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit bb118f20fe6581a4acbd3799ed31ab0d21e72e78
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:25:48 2021 +0200
gnu: r-aroma-light: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-aroma-light): Move from here...
* gnu/packages/bioconductor.scm (r-aroma-light): ...to here.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8fc035b..3f057a3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,33 @@ annotation data packages using SQLite data storage.")
databases. Packages produced are intended to be used with AnnotationDbi.")
(license license:artistic2.0)))
+(define-public r-aroma-light
+ (package
+ (name "r-aroma-light")
+ (version "3.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "aroma.light" version))
+ (sha256
+ (base32
+ "0pi37rlfqh24p9wd7l1xb3f7c7938xdscgcc5agp8c9qhajq25a0"))))
+ (properties `((upstream-name . "aroma.light")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-matrixstats" ,r-matrixstats)
+ ("r-r-methodss3" ,r-r-methodss3)
+ ("r-r-oo" ,r-r-oo)
+ ("r-r-utils" ,r-r-utils)))
+ (home-page "https://github.com/HenrikBengtsson/aroma.light")
+ (synopsis "Methods for normalization and visualization of microarray data")
+ (description
+ "This package provides methods for microarray analysis that take basic
+data types such as matrices and lists of vectors. These methods can be used
+standalone, be utilized in other packages, or be wrapped up in higher-level
+classes.")
+ (license license:gpl2+)))
+
(define-public r-biobase
(package
(name "r-biobase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f6ec7e3..687da80 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9196,33 +9196,6 @@ their variance is independent of the mean, and they are
usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-aroma-light
- (package
- (name "r-aroma-light")
- (version "3.20.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "aroma.light" version))
- (sha256
- (base32
- "0pi37rlfqh24p9wd7l1xb3f7c7938xdscgcc5agp8c9qhajq25a0"))))
- (properties `((upstream-name . "aroma.light")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-matrixstats" ,r-matrixstats)
- ("r-r-methodss3" ,r-r-methodss3)
- ("r-r-oo" ,r-r-oo)
- ("r-r-utils" ,r-r-utils)))
- (home-page "https://github.com/HenrikBengtsson/aroma.light")
- (synopsis "Methods for normalization and visualization of microarray data")
- (description
- "This package provides methods for microarray analysis that take basic
-data types such as matrices and lists of vectors. These methods can be used
-standalone, be utilized in other packages, or be wrapped up in higher-level
-classes.")
- (license license:gpl2+)))
-
(define-public r-deseq
(package
(name "r-deseq")
- branch master updated (d2d1f8b -> ec543ba), guix-commits, 2021/05/31
- 02/54: gnu: r-rtracklayer: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 08/54: gnu: r-samr: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 04/54: gnu: r-topgo: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 09/54: gnu: r-impute: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 13/54: gnu: r-genomationdata: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 11/54: gnu: r-go-db: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 14/54: gnu: r-pcamethods: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 16/54: gnu: r-aroma-light: Move to (gnu packages bioconductor).,
guix-commits <=
- 19/54: gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 06/54: gnu: r-msnid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 07/54: gnu: r-msnbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 05/54: gnu: r-bsgenome: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 03/54: gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 01/54: gnu: r-genomicalignments: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 12/54: gnu: r-genomation: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 10/54: gnu: r-seqpattern: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 15/54: gnu: r-mzid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31