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29/324: gnu: r-deepsnv: Update to 1.38.0.
From: |
guix-commits |
Subject: |
29/324: gnu: r-deepsnv: Update to 1.38.0. |
Date: |
Sat, 5 Jun 2021 03:14:32 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f0f839c1240d8d42bab6351ab463d0ca38985e2f
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jun 5 08:49:39 2021 +0200
gnu: r-deepsnv: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioconductor.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 34df07c..a7b4ade 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1442,17 +1442,15 @@ biological sequences.")
(define-public r-deepsnv
(package
(name "r-deepsnv")
- (version "1.36.0")
+ (version "1.38.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "deepSNV" version))
(sha256
(base32
- "1lbvx9liql8fkb4y020kwpgp61vzg67cy640dc4kybglcw9dx6j0"))))
+ "0zz56hf417m7bgg2g2wpbaik30pi6h2nam1n5bviqgdn4mv8n0bs"))))
(properties `((upstream-name . "deepSNV")))
(build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
@@ -1461,6 +1459,8 @@ biological sequences.")
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)
("r-vgam" ,r-vgam)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/gerstung-lab/deepSNV/")
(synopsis "Detection of subclonal SNVs in deep sequencing data")
(description
- 44/324: gnu: r-annotationforge: Update to 1.34.0., (continued)
- 44/324: gnu: r-annotationforge: Update to 1.34.0., guix-commits, 2021/06/05
- 50/324: gnu: r-biocparallel: Update to 1.26.0., guix-commits, 2021/06/05
- 30/324: gnu: r-delayedarray: Update to 0.18.0., guix-commits, 2021/06/05
- 32/324: gnu: r-ideoviz: Update to 1.28.0., guix-commits, 2021/06/05
- 53/324: gnu: r-bsgenome: Update to 1.60.0., guix-commits, 2021/06/05
- 58/324: gnu: r-copywriter: Update to 2.24.0., guix-commits, 2021/06/05
- 60/324: gnu: r-dexseq: Update to 1.38.0., guix-commits, 2021/06/05
- 63/324: gnu: r-edger: Update to 3.34.0., guix-commits, 2021/06/05
- 70/324: gnu: r-genomeinfodb: Update to 1.28.0., guix-commits, 2021/06/05
- 71/324: gnu: r-genomicalignments: Update to 1.28.0., guix-commits, 2021/06/05
- 29/324: gnu: r-deepsnv: Update to 1.38.0.,
guix-commits <=
- 54/324: gnu: r-category: Update to 2.58.0., guix-commits, 2021/06/05
- 49/324: gnu: r-biomart: Update to 2.48.0., guix-commits, 2021/06/05
- 56/324: gnu: r-chipseq: Update to 1.42.0., guix-commits, 2021/06/05
- 66/324: gnu: r-gage: Update to 2.42.0., guix-commits, 2021/06/05
- 57/324: gnu: r-complexheatmap: Update to 2.8.0., guix-commits, 2021/06/05
- 73/324: gnu: r-genomicfiles: Update to 1.28.0., guix-commits, 2021/06/05
- 79/324: gnu: r-impute: Update to 1.66.0., guix-commits, 2021/06/05
- 86/324: gnu: r-mzid: Update to 1.30.0., guix-commits, 2021/06/05
- 88/324: gnu: r-pcamethods: Update to 1.84.0., guix-commits, 2021/06/05
- 92/324: gnu: r-regioner: Update to 1.24.0., guix-commits, 2021/06/05