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branch master updated: gnu: Add r-wppi.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-wppi. |
Date: |
Thu, 14 Apr 2022 06:47:47 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new dd9d26bce6 gnu: Add r-wppi.
dd9d26bce6 is described below
commit dd9d26bce626cb2900910f1706de38c47a52915a
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Mon Apr 11 16:29:16 2022 +0200
gnu: Add r-wppi.
* gnu/packages/bioconductor.scm (r-wppi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8664f1139f..786e79b931 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9315,6 +9315,47 @@ imports from AIA/ANDI NetCDF, mzXML, mzData and mzML
files. It preprocesses
data for high-throughput, untargeted analyte profiling.")
(license license:gpl2+)))
+(define-public r-wppi
+ (package
+ (name "r-wppi")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "wppi" version))
+ (sha256
+ (base32
+ "1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"))))
+ (properties `((upstream-name . "wppi")))
+ (build-system r-build-system)
+ ;; This is necessary because omnipathr attempts to write a configuration
+ ;; file to HOME.
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs (list r-dplyr
+ r-igraph
+ r-logger
+ r-magrittr
+ r-matrix
+ r-omnipathr
+ r-progress
+ r-purrr
+ r-rcurl
+ r-rlang
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/AnaGalhoz37/wppi")
+ (synopsis "Weighting protein-protein interactions")
+ (description
+ "This package predicts functional relevance of protein-protein
+interactions based on functional annotations such as Human Protein Ontology
+and Gene Ontology, and prioritizes genes based on network topology, functional
+scores and a path search algorithm.")
+ (license license:expat)))
+
(define-public r-wrench
(package
(name "r-wrench")
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