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05/06: gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38.
From: |
guix-commits |
Subject: |
05/06: gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38. |
Date: |
Thu, 30 Mar 2023 08:43:04 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 033955b4e8fbace7d3ddbf71eeeab63e07679b70
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Mar 30 14:38:42 2023 +0200
gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38.
* gnu/packages/bioinformatics.scm
(r-illuminahumanmethylationepicanno-ilm10b5-hg38): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6e7125b8ba..d0bcee5260 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14128,6 +14128,34 @@ analysing cytometry data in R.")
spatial single-cell expression data.")
(license license:expat))))
+(define-public r-illuminahumanmethylationepicanno-ilm10b5-hg38
+ (let ((commit "3db06910e27f626e0cc8b335ff45cf9a4050a36a")
+ (revision "1"))
+ (package
+ (name "r-illuminahumanmethylationepicanno-ilm10b5-hg38")
+ (version (git-version "0.0.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url
+
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICanno.ilm10b5.hg38")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0y8fhiwmkldi57f8nq64njfgljw68cm6pb1vh44hjwcc12k48sqr"))))
+ (properties `((upstream-name .
"IlluminaHumanMethylationEPICanno.ilm10b5.hg38")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-minfi))
+ (home-page
+
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICanno.ilm10b5.hg38")
+ (synopsis "Illumina Human Methylation EPIC Annotation version 1.0B5")
+ (description
+ "This package provides a companion annotation file to the
+@code{IlluminaHumanMethylationEPICmanifest} package based on the same
+annotation 1.0B5.")
+ (license license:artistic2.0))))
+
(define-public gffread
;; We cannot use the tagged release because it is not in sync with gclib.
;; See https://github.com/gpertea/gffread/issues/26
- branch master updated (96e81b18b9 -> caf163536a), guix-commits, 2023/03/30
- 02/06: gnu: Add r-flowsorted-blood-450k., guix-commits, 2023/03/30
- 05/06: gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38.,
guix-commits <=
- 06/06: gnu: Add r-maxprobes., guix-commits, 2023/03/30
- 04/06: gnu: Add r-shinymethyl., guix-commits, 2023/03/30
- 01/06: gnu: Add r-enmix., guix-commits, 2023/03/30
- 03/06: gnu: Add r-flowsorted-blood-epic., guix-commits, 2023/03/30