[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
03/06: gnu: Add r-flowsorted-blood-epic.
From: |
guix-commits |
Subject: |
03/06: gnu: Add r-flowsorted-blood-epic. |
Date: |
Thu, 30 Mar 2023 08:43:04 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a5997202b83b7f22e1f96ec3f99497ae677d6ddb
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Mar 30 14:34:05 2023 +0200
gnu: Add r-flowsorted-blood-epic.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3d6a545ff8..e01af8f7e5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1521,6 +1521,40 @@ methylation microarrays, and an object depicting which
CpGs on the array are
associated with cell type.")
(license license:artistic2.0)))
+(define-public r-flowsorted-blood-epic
+ (package
+ (name "r-flowsorted-blood-epic")
+ (version "2.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FlowSorted.Blood.EPIC" version
+ 'experiment))
+ (sha256
+ (base32
+ "1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1"))))
+ (properties `((upstream-name . "FlowSorted.Blood.EPIC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationhub
+ r-experimenthub
+ r-genefilter
+ r-minfi
+ r-nlme
+ r-quadprog
+ r-s4vectors
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/immunomethylomics/FlowSorted.Blood.EPIC")
+ (synopsis
+ "Illumina EPIC data on immunomagnetic sorted peripheral adult blood
cells")
+ (description
+ "This package provides raw data objects to be used for blood cell
+proportion estimation in minfi and similar packages. The
+@code{FlowSorted.Blood.EPIC} object is based in samples assayed by Brock
+Christensen and colleagues; for details see Salas et al. 2018.
+https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.")
+ (license license:gpl3)))
+
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
- branch master updated (96e81b18b9 -> caf163536a), guix-commits, 2023/03/30
- 02/06: gnu: Add r-flowsorted-blood-450k., guix-commits, 2023/03/30
- 05/06: gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38., guix-commits, 2023/03/30
- 06/06: gnu: Add r-maxprobes., guix-commits, 2023/03/30
- 04/06: gnu: Add r-shinymethyl., guix-commits, 2023/03/30
- 01/06: gnu: Add r-enmix., guix-commits, 2023/03/30
- 03/06: gnu: Add r-flowsorted-blood-epic.,
guix-commits <=