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[bug#54511] [PATCH] gnu: Add r-cytobackbone.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#54511] [PATCH] gnu: Add r-cytobackbone. |
Date: |
Mon, 21 Mar 2022 20:19:18 +0100 |
* gnu/packages/bioconductor.scm (r-cytobackbone): New variable.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 55d397e5cf..6f5a040f65 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10066,6 +10066,44 @@ (define-public r-consensusclusterplus
cluster count and membership by stability evidence in unsupervised analysis.")
(license license:gpl2)))
+;; It doesn't have a system of releases. This package depends on a bioconductor
+;; input.
+(define-public r-cytobackbone
+ (let ((commit "4c1a0a35cc5ae1f8f516127cec92351d96fe26e7") (revision "1"))
+ (package
+ (name "r-cytobackbone")
+ (version (git-version "1.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tchitchek-lab/CytoBackBone")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0ahiad14zcgdk42xzw5xryic2ibn2l8lkrcdvl2b5sz2js028yb3"))))
+ (properties `((upstream-name #{.}# "CytoBackBone")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-flowcore r-flowutils r-fnn r-ggplot2
+ r-preprocesscore))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/tchitchek-lab/CytoBackBone")
+ (synopsis
+ "Merging of phenotype information from different cytometric profiles")
+ (description
+ "Single-cell technologies are the most suitable techniques for the
+characterization of cells by the differential expression of the molecules that
+define their roles and functions in tissues. Among these techniques, mass
+cytometry represents a leap forward by increasing the number of available
+measurements to approximately 40 cell markers. Thanks to this technology,
+detailed immune responses were described in several diseases. However, the
+study of immune responses, such as that due to viral infections or auto-immune
+diseases, could be further improved by increasing the number of simultaneously
+measurable markers. To increase this number, we designed an algorithm, named
+@code{CytoBackBone}, which combines phenotypic information of different
+cytometric profiles obtained from different cytometry panels.")
+ (license license:gpl2))))
+
(define-public r-cytolib
(package
(name "r-cytolib")
--
2.34.0
- [bug#54511] [PATCH] gnu: Add r-cytobackbone.,
Mădălin Ionel Patrașcu <=
- [bug#54511] [PATCH] gnu: Add r-cytobackbone., Maxime Devos, 2022/03/21
- [bug#54511] [PATCH] gnu: Add r-cytobackbone., Maxime Devos, 2022/03/21
- [bug#54511] [PATCH] gnu: Add r-cytobackbone., Maxime Devos, 2022/03/21
- [bug#54511] [PATCH] gnu: Add r-cytobackbone., Mădălin Ionel Patrașcu, 2022/03/22
- bug#54511: [PATCH] gnu: Add r-cytobackbone., Ricardo Wurmus, 2022/03/29