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[bug#54511] [PATCH] gnu: Add r-cytobackbone.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#54511] [PATCH] gnu: Add r-cytobackbone. |
Date: |
Tue, 22 Mar 2022 11:34:31 +0100 |
* gnu/packages/bioconductor.scm (r-cytobackbone): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 55d397e5cf..bf123ef7cc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10066,6 +10066,48 @@ (define-public r-consensusclusterplus
cluster count and membership by stability evidence in unsupervised analysis.")
(license license:gpl2)))
+;; It doesn't have a system of releases. This package depends on a bioconductor
+;; input.
+(define-public r-cytobackbone
+ (let ((commit "4c1a0a35cc5ae1f8f516127cec92351d96fe26e7") (revision "1"))
+ (package
+ (name "r-cytobackbone")
+ (version (git-version "1.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tchitchek-lab/CytoBackBone")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0ahiad14zcgdk42xzw5xryic2ibn2l8lkrcdvl2b5sz2js028yb3"))))
+ (properties `((upstream-name . "CytoBackBone")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-flowcore
+ r-flowutils
+ r-fnn
+ r-ggplot2
+ r-preprocesscore))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/tchitchek-lab/CytoBackBone")
+ (synopsis
+ "Merging of phenotype information from different cytometric profiles")
+ (description
+ "This package implements an algorithm which increases the number of
+simultaneously measurable markers and in this way helps with study of the
+immune responses. Thus, the present algorithm, named @code{CytoBackBone},
+allows combining phenotypic information of cells from different cytometric
+profiles obtained from different cytometry panels. This computational approach
+is based on the principle that each cell has its own phenotypic and functional
+characteristics that can be used as an identification card.
+@code{CytoBackBone} uses a set of predefined markers, that we call the
+backbone, to define this identification card. The phenotypic information of
+cells with similar identification cards in the different cytometric profiles is
+then merged.")
+ (license license:gpl2))))
+
(define-public r-cytolib
(package
(name "r-cytolib")
--
2.34.0