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[bug#60885] [PATCH 1/4] gnu: Add python-vireosnp.
From: |
Simon Tournier |
Subject: |
[bug#60885] [PATCH 1/4] gnu: Add python-vireosnp. |
Date: |
Tue, 17 Jan 2023 18:30:38 +0100 |
* gnu/packages/bioinformatics.scm (python-vireosnp): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e60dffc21e..5fc2d18690 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17604,6 +17604,28 @@ (define-public r-kbet
;; Any version of the GPL
(license license:gpl3+))))
+(define-public python-vireosnp
+ (package
+ (name "python-vireosnp")
+ (version "0.5.7")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "vireoSNP" version))
+ (sha256
+ (base32
+ "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d"))))
+ (build-system python-build-system)
+ (propagated-inputs (list python-matplotlib python-numpy python-scipy))
+ (home-page "https://github.com/huangyh09/vireoSNP")
+ (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
+ (description
+ "This package provides a deconvolution based on Single Nucleotide
+Position (SNP) for multiplexed scRNA-seq data. The name vireo stand for
+Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in
+multiplexed scRNA-seq data and follows the clone identification from
+single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.")
+ (license license:asl2.0)))
+
(define-public ccwl
(package
(name "ccwl")
--
2.38.1