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[Octave-bug-tracker] [bug #63707] Segfault with "make check" when config
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From: |
Arun Giridhar |
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Subject: |
[Octave-bug-tracker] [bug #63707] Segfault with "make check" when configured with all defaults |
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Date: |
Wed, 25 Jan 2023 16:28:50 -0500 (EST) |
URL:
<https://savannah.gnu.org/bugs/?63707>
Summary: Segfault with "make check" when configured with all
defaults
Project: GNU Octave
Submitter: arungiridhar
Submitted: Wed 25 Jan 2023 04:28:48 PM EST
Category: Classdef
Severity: 3 - Normal
Priority: 5 - Normal
Item Group: Segfault, Bus Error, etc.
Status: None
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Release: dev
Discussion Lock: Any
Operating System: GNU/Linux
Fixed Release: None
Planned Release: None
_______________________________________________________
Follow-up Comments:
-------------------------------------------------------
Date: Wed 25 Jan 2023 04:28:48 PM EST By: Arun Giridhar <arungiridhar>
This was observed with the default branch, hg id 17ec50a2f044 but is probably
older. A segfault occurs during "make check" when configured with all
defaults:
$ unset CFLAGS CXXFLAGS FFLAGS CC CXX F77
$ unalias gcc g++ gfortran clang clang++
$ ../configure
The unset and unalias lines are to show "nothing up my sleeve". Everything
that follows is chosen by configure.
Configuration summary:
Octave is now configured for x86_64-pc-linux-gnu
Source directory: ..
Installation prefix: /usr/local
C compiler: gcc -pthread -fopenmp -Wall -W -Wshadow
-Wformat -Wpointer-arith -Wmissing-prototypes -Wstrict-prototypes
-Wwrite-strings -Wcast-align -Wcast-qual -g -O2
C++ compiler: g++ -pthread -fopenmp -Wall -W -Wshadow
-Woverloaded-virtual -Wold-style-cast -Wformat -Wpointer-arith -Wwrite-strings
-Wcast-align -Wcast-qual -g -O2
Fortran compiler: gfortran -g -O2 -std=legacy
CPPFLAGS:
Fortran libraries: -L/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.1
-L/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.1/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.1/../../..
-lgfortran -lm -lquadmath
Lex libraries:
LIBS: -lpthread -lm
LDFLAGS:
Extra LDFLAGS:
AMD CPPFLAGS:
AMD LDFLAGS:
AMD libraries: -lamd
ARPACK CPPFLAGS: -I/usr/include/arpack
ARPACK LDFLAGS:
ARPACK libraries: -larpack
BLAS libraries: -lopenblas
BZ2 CPPFLAGS:
BZ2 LDFLAGS:
BZ2 libraries: -lbz2
CAMD CPPFLAGS:
CAMD LDFLAGS:
CAMD libraries: -lcamd
CARBON libraries:
CCOLAMD CPPFLAGS:
CCOLAMD LDFLAGS:
CCOLAMD libraries: -lccolamd
CHOLMOD CPPFLAGS:
CHOLMOD LDFLAGS:
CHOLMOD libraries: -lcholmod
COLAMD CPPFLAGS:
COLAMD LDFLAGS:
COLAMD libraries: -lcolamd
CURL CPPFLAGS:
CURL LDFLAGS:
CURL libraries: -lcurl
CXSPARSE CPPFLAGS:
CXSPARSE LDFLAGS:
CXSPARSE libraries: -lcxsparse
DL libraries:
FFTW3 CPPFLAGS:
FFTW3 LDFLAGS:
FFTW3 libraries: -lfftw3_threads -lfftw3
FFTW3F CPPFLAGS:
FFTW3F LDFLAGS:
FFTW3F libraries: -lfftw3f_threads -lfftw3f
FLTK CPPFLAGS:
FLTK LDFLAGS:
FLTK libraries: -lfltk_gl -lGLU -lGL -lfltk -lm -lX11 -lXext
-lpthread -lXinerama -lXfixes -lXcursor -lXft -lXrender -lm -lfontconfig -ldl
fontconfig CPPFLAGS: -I/usr/include/freetype2
-I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/glib-2.0
-I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4
fontconfig libraries: -lfontconfig -lfreetype
FreeType2 CPPFLAGS: -I/usr/include/freetype2
-I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/glib-2.0
-I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4 -pthread
FreeType2 libraries: -lfreetype
GLPK CPPFLAGS:
GLPK LDFLAGS:
GLPK libraries: -lglpk
HDF5 CPPFLAGS:
HDF5 LDFLAGS:
HDF5 libraries: -lhdf5
Java home: /usr/lib/jvm/java-19-openjdk
Java JVM path: /usr/lib/jvm/java-19-openjdk/lib/server
Java CPPFLAGS: -I/usr/lib/jvm/java-19-openjdk/include
-I/usr/lib/jvm/java-19-openjdk/include/linux
Java libraries:
KLU CPPFLAGS:
KLU LDFLAGS:
KLU libraries: -lklu
LAPACK libraries:
Magick++ CPPFLAGS: -I/usr/include/GraphicsMagick
Magick++ LDFLAGS:
Magick++ libraries: -lGraphicsMagick++ -lGraphicsMagick
OpenGL libraries: -lGL -lGLU
PCRE CPPFLAGS:
PCRE LDFLAGS:
PCRE libraries: -lpcre2-8
PortAudio CPPFLAGS:
PortAudio LDFLAGS:
PortAudio libraries: -lportaudio -lasound -lm -lpthread
PTHREAD flags: -pthread
PTHREAD libraries: -lpthread
QHULL CPPFLAGS:
QHULL LDFLAGS:
QHULL libraries: -lqhull_r
QRUPDATE CPPFLAGS:
QRUPDATE LDFLAGS:
QRUPDATE libraries: -lqrupdate
Qt CPPFLAGS: -I/usr/include/qt/QtCore -I/usr/include/qt
-I/usr/include/qt/QtGui -I/usr/include/qt/QtHelp -I/usr/include/qt/QtWidgets
-I/usr/include/qt/QtSql -I/usr/include/qt/QtNetwork -I/usr/include/qt/QtOpenGL
-I/usr/include/qt/QtPrintSupport -I/usr/include/qt/QtXml
Qt LDFLAGS:
Qt GUI libraries: -lQt5Help -lQt5Sql -lQt5Network -lQt5OpenGL
-lQt5PrintSupport -lQt5Widgets -lQt5Gui -lQt5Xml -lQt5Core -lqscintilla2_qt5
Qt moc: moc-qt5
Qt uic: uic-qt5
Qt rcc: rcc-qt5
Qt lrelease: lrelease-qt5
Qt qcollectiongenerator: qcollectiongenerator-qt5
Qt qhelpgenerator: qhelpgenerator-qt5
READLINE libraries: -lreadline
Sndfile CPPFLAGS: -I/usr/include/opus
Sndfile LDFLAGS:
Sndfile libraries: -lsndfile
SPQR CPPFLAGS:
SPQR LDFLAGS:
SPQR libraries: -lspqr
SuiteSparse config libraries: -lsuitesparseconfig
SUNDIALS IDA CPPFLAGS:
SUNDIALS IDA LDFLAGS:
SUNDIALS IDA libraries: -lsundials_ida
SUNDIALS NVECTOR CPPFLAGS:
SUNDIALS NVECTOR LDFLAGS:
SUNDIALS NVECTOR libraries: -lsundials_nvecserial
SUNLINSOL KLU CPPFLAGS:
SUNLINSOL KLU LDFLAGS:
SUNLINSOL KLU libraries: -lsundials_sunlinsolklu
UMFPACK CPPFLAGS:
UMFPACK LDFLAGS:
UMFPACK libraries: -lumfpack
X11 include flags:
X11 libraries: -lX11
Z CPPFLAGS:
Z LDFLAGS:
Z libraries: -lz
Default pager: less
gnuplot: gnuplot
Build Octave Qt GUI: yes (version: 5)
Build Java interface: yes
Build static libraries: no
Build shared libraries: yes
Dynamic Linking API: dlopen
Include support for GNU readline: yes
Use push parser in command line REPL: yes
64-bit array dims and indexing: yes
64-bit BLAS array dims and indexing: no
OpenMP SMP multithreading: yes
Truncate intermediate FP results: yes
Build cross tools: no
Build docs: yes
configure: WARNING: RapidJSON library found, but some features do not seem to
work properly. The "PrettyWriter" option in jsonencode will be disabled.
configure: WARNING: JAVA_HOME environment variable not initialized.
Auto-detection will proceed but is unreliable.
configure:
configure: NOTE: Libraries or auxiliary programs may be skipped if they are
not found
configure: NOTE: OR if they are missing required features on your system.
Building is OK. Then "make check" segfaults with:
libinterp/octave-value/ov-class.cc-tst .........................fatal:
caught signal Segmentation fault -- stopping myself...
make[4]: *** [Makefile:2879: check-local] Error 139
Configuring with `--disable-java` prevents the problem. If that is done, then
`make check` passes. The correspinding log for ov-class.cc is:
>>>>> processing ..../libinterp/octave-value/ov-class.cc-tst
***** testif HAVE_JAVA; usejava ("jvm")
jobj = javaObject ("java.lang.StringBuffer");
assert (class (jobj), "java.lang.StringBuffer");
----- skipped test (missing feature)
***** testif HAVE_JAVA; usejava ("jvm")
## The first and last assert() are equal on purpose. The assert() in
## the middle with an invalid class name will cause the java code to
## throw exceptions which we then must clear properly (or all other calls
## will fail). So we test this too.
assert (isa (javaObject ("java.lang.Double", 10), "java.lang.Number"));
assert (isa (javaObject ("java.lang.Double", 10), "not_a_class"), false);
assert (isa (javaObject ("java.lang.Double", 10), "java.lang.Number"));
----- skipped test (missing feature)
Therefore those two tests are causing segfaults.
Java version:
$ java --version
openjdk 19.0.2 2023-01-17
OpenJDK Runtime Environment (build 19.0.2+7)
OpenJDK 64-Bit Server VM (build 19.0.2+7, mixed mode)
Should the default option be to disable Java unless explicitly enabled with
`--enable-java`?
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- [Octave-bug-tracker] [bug #63707] Segfault with "make check" when configured with all defaults,
Arun Giridhar <=