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Re: ZSAV format support [ZCOMPRESSED subcommand]


From: Hugo Alejandro
Subject: Re: ZSAV format support [ZCOMPRESSED subcommand]
Date: Wed, 9 Oct 2013 09:36:52 -0300

Great, I'm surprised your ability to decipher the file type.
When PSPP fully support ZSAV  will be a big improvement in handling large databases.

Thank you

--
Hugo Valencia


2013/10/9 Ben Pfaff <address@hidden>
I modified to pspp-dump-sav to interpret the descriptors in zsav
compressed files.  So far this modified pspp-dump-sav interprets,
without complaint, all seven of the .zsav files I have.

The next step is to modify the PSPP sav file reader to actually read the
data.

--8<--------------------------cut here-------------------------->8--


diff --git a/utilities/pspp-dump-sav.c b/utilities/pspp-dump-sav.c
index c6b5823..6ca45bc 100644
--- a/utilities/pspp-dump-sav.c
+++ b/utilities/pspp-dump-sav.c
@@ -14,6 +14,34 @@
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>. */

+/*
+000035a  5a 03 00 00 00 00 00 00 - Byte offset of this block, 0x35a
+0000362  12 94 03 00 00 00 00 00 - Byte offset of the next block, 0x39412.
+000036a  48 00 00 00 00 00 00 00 - Length of next block's header, 0x48 bytes.
+
+0000372  0x37c49 bytes of compressed data that inflate to 0x3ff000 bytes
+0037fbb  0x1457 bytes of compressed data that inflate to 0x6bf00 bytes
+
+0039412  9c ff ff ff ff ff ff ff - Value -100, dunno why (compression bias?)
+003941a  00 00 00 00 00 00 00 00 - ?
+0039422  00 f0 3f 00             - Inflated data block size
+0034926  02 00 00 00             - Number of compressed data blocks
+
+First compressed data block descriptor:
+003942a  5a 03 00 00 00 00 00 00
+       = starting byte offset of data in block 1 if no zlib compression
+0039432  72 03 00 00 00 00 00 00 - Starting offset of data block, 0x372.
+003943a  00 f0 3f 00             - Inflated data size, 0x3ff000 bytes.
+003943e  49 7c 03 00             - Compressed data size, 0x37c49 bytes.
+
+Second compressed data block descriptor:
+0039442  5a f3 3f 00 00 00 00 00 - 0x3ff35a = 0x35a + 0x3ff000
+       = starting byte offset of data in block 2 if no zlib compression
+003944a  bb 7f 03 00 00 00 00 00 - Starting offset of data block, 0x37fbb.
+0039452  00 bf 06 00             - Inflated data size, 0x6bf00 bytes.
+0039456  57 14 00 00             - Deflated data size, 0x1457 bytes.
+*/
+
 #include <config.h>

 #include <ctype.h>
@@ -39,6 +67,13 @@

 #define ID_MAX_LEN 64

+enum compression
+  {
+    COMP_NONE,
+    COMP_SIMPLE,
+    COMP_ZLIB
+  };
+
 struct sfm_reader
   {
     const char *file_name;
@@ -52,7 +87,7 @@ struct sfm_reader
     enum integer_format integer_format;
     enum float_format float_format;

-    bool compressed;
+    enum compression compression;
     double bias;
   };

@@ -87,7 +122,8 @@ static void read_long_string_missing_values (struct sfm_reader *r,
                                              size_t size, size_t count);
 static void read_unknown_extension (struct sfm_reader *,
                                     size_t size, size_t count);
-static void read_compressed_data (struct sfm_reader *, int max_cases);
+static void read_simple_compressed_data (struct sfm_reader *, int max_cases);
+static void read_zlib_compressed_data (struct sfm_reader *);

 static struct text_record *open_text_record (
   struct sfm_reader *, size_t size);
@@ -180,7 +216,7 @@ main (int argc, char *argv[])
       r.n_var_widths = 0;
       r.allocated_var_widths = 0;
       r.var_widths = 0;
-      r.compressed = false;
+      r.compression = COMP_NONE;

       if (argc - optind > 1)
         printf ("Reading \"%s\":\n", r.file_name);
@@ -218,8 +254,13 @@ main (int argc, char *argv[])
               (long long int) ftello (r.file),
               (long long int) ftello (r.file) + 4);

-      if (r.compressed && max_cases > 0)
-        read_compressed_data (&r, max_cases);
+      if (r.compression == COMP_SIMPLE)
+        {
+          if (max_cases > 0)
+            read_simple_compressed_data (&r, max_cases);
+        }
+      else if (r.compression == COMP_ZLIB)
+        read_zlib_compressed_data (&r);

       fclose (r.file);
     }
@@ -245,7 +286,11 @@ read_header (struct sfm_reader *r)
   read_string (r, rec_type, sizeof rec_type);
   read_string (r, eye_catcher, sizeof eye_catcher);

-  if (strcmp ("$FL2", rec_type) != 0)
+  if (!strcmp ("$FL2", rec_type))
+    r->compression = COMP_NONE;
+  else if (!strcmp ("$FL3", rec_type))
+    r->compression = COMP_ZLIB;
+  else
     sys_error (r, "This is not an SPSS system file.");

   /* Identify integer format. */
@@ -265,7 +310,20 @@ read_header (struct sfm_reader *r)
   weight_index = read_int (r);
   ncases = read_int (r);

-  r->compressed = compressed != 0;
+  if (r->compression == COMP_NONE)
+    {
+      if (compressed == 1)
+        r->compression = COMP_SIMPLE;
+      else if (compressed != 0)
+        sys_error (r, "SAV file header has invalid compression value "
+                   "%"PRId32".", compressed);
+    }
+  else
+    {
+      if (compressed != 2)
+        sys_error (r, "ZSAV file header has invalid compression value "
+                   "%"PRId32".", compressed);
+    }

   /* Identify floating-point format and obtain compression bias. */
   read_bytes (r, raw_bias, sizeof raw_bias);
@@ -289,7 +347,12 @@ read_header (struct sfm_reader *r)
   printf ("File header record:\n");
   printf ("\t%17s: %s\n", "Product name", eye_catcher);
   printf ("\t%17s: %"PRId32"\n", "Layout code", layout_code);
-  printf ("\t%17s: %"PRId32"\n", "Compressed", compressed);
+  printf ("\t%17s: %"PRId32" (%s)\n", "Compressed",
+          compressed,
+          r->compression == COMP_NONE ? "no compression"
+          : r->compression == COMP_SIMPLE ? "simple compression"
+          : r->compression == COMP_ZLIB ? "ZLIB compression"
+          : "<error>");
   printf ("\t%17s: %"PRId32"\n", "Weight index", weight_index);
   printf ("\t%17s: %"PRId32"\n", "Number of cases", ncases);
   printf ("\t%17s: %g\n", "Compression bias", r->bias);
@@ -1170,7 +1233,7 @@ read_variable_attributes (struct sfm_reader *r, size_t size, size_t count)
 }

 static void
-read_compressed_data (struct sfm_reader *r, int max_cases)
+read_simple_compressed_data (struct sfm_reader *r, int max_cases)
 {
   enum { N_OPCODES = 8 };
   uint8_t opcodes[N_OPCODES];
@@ -1258,6 +1321,82 @@ read_compressed_data (struct sfm_reader *r, int max_cases)
         }
     }
 }
+
+static void
+read_zlib_compressed_data (struct sfm_reader *r)
+{
+  long long int ofs;
+  long long int this_ofs, next_ofs, next_len;
+  long long int bias, zero;
+  unsigned int block_size, n_blocks;
+  unsigned int i;
+
+  read_int (r);
+  ofs = ftello (r->file);
+  printf ("\n%08llx: ZLIB compressed data header:\n", ofs);
+
+  this_ofs = read_int64 (r);
+  next_ofs = read_int64 (r);
+  next_len = read_int64 (r);
+
+  printf ("\tHeader offset: 0x%llx\n", this_ofs);
+  if (this_ofs != ofs)
+    printf ("\t\t(This was expected to be 0x%llx.)\n", ofs);
+  printf ("\tTrailer offset: 0x%llx\n", next_ofs);
+  printf ("\tTrailer length: %lld\n", next_len);
+  if (next_len < 24 || next_len % 24)
+    printf ("\t\t(Trailer length is not a positive multiple of 24.)\n");
+
+  printf ("\n%08llx: 0x%llx bytes of ZLIB compressed data\n",
+          ofs + 8 * 3, next_ofs - (ofs + 8 * 3));
+
+  skip_bytes (r, next_ofs - (ofs + 8 * 3));
+
+  printf ("\n%08llx: ZLIB compressed data trailer:\n", next_ofs);
+  bias = read_int64 (r);
+  zero = read_int64 (r);
+  block_size = read_int (r);
+  n_blocks = read_int (r);
+  printf ("\tCompression bias: %lld\n", bias);
+  printf ("\tZero: 0x%llx\n", zero);
+  if (zero != 0)
+    printf ("\t\t(This was expected to be 0.)\n");
+  printf ("\tBlock size: 0x%x\n", block_size);
+  if (block_size != 0x3ff000)
+    printf ("\t\t(Block size is ordinarily 0x3ff000.)\n");
+  printf ("\tNumber of blocks: %u\n", n_blocks);
+  if (n_blocks != next_len / 24 - 1)
+    printf ("\t\t(Expected %llu blocks.)\n", next_len / 24 - 1);
+
+  for (i = 0; i < n_blocks; i++)
+    {
+      long long int blockinfo_ofs = ftello (r->file);
+      unsigned long long int uncompressed_ofs = read_int64 (r);
+      unsigned long long int compressed_ofs = read_int64 (r);
+      unsigned int inflated_size = read_int (r);
+      unsigned int deflated_size = read_int (r);
+
+      printf ("\n%08llx: Block info for block %d of %d\n",
+              blockinfo_ofs, i + 1, n_blocks);
+
+      printf ("\tOffset if ZLIB were turned off: 0x%llx\n", uncompressed_ofs);
+      if (i == 0 && uncompressed_ofs != ofs)
+        printf ("\t\t(This was expected to be 0x%llx.)\n", ofs);
+
+      printf ("\tOffset of ZLIB compressed data: 0x%llx\n", compressed_ofs);
+      if (i == 0 && compressed_ofs != ofs + 24)
+        printf ("\t\t(This was expected to be 0x%llx.)\n", ofs + 24);
+
+      printf ("\tDeflated data length: 0x%x\n", deflated_size);
+      if (i == n_blocks - 1 && compressed_ofs + deflated_size != next_ofs)
+        printf ("\t\t(This was expected to be 0x%llx.)\n",
+                next_ofs - deflated_size);
+
+      printf ("\tInflated data length: 0x%x\n", inflated_size);
+      if (i < n_blocks - 1 && inflated_size != block_size)
+        printf ("\t\t(This was expected to be 0x%x.)\n", block_size);
+    }
+}

 /* Helpers for reading records that consist of structured text
    strings. */


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