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01/29: gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.


From: guix-commits
Subject: 01/29: gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.
Date: Wed, 4 Dec 2019 03:46:43 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 6998ecba74a59203aad927733d2ac5738235e115
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Dec 4 09:24:09 2019 +0100

    gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.
    
    * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
    bioconductor-uri.
    [arguments]: Permit substitution.
---
 gnu/packages/bioconductor.scm | 11 ++---------
 1 file changed, 2 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 89547be..5e727ea 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -76,21 +76,14 @@ objects.")
     (version "1.4.0")
     (source (origin
               (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "BSgenome.Celegans.UCSC.ce10_"
-                                  version ".tar.gz"))
+              (uri (bioconductor-uri "BSgenome.Celegans.UCSC.ce10"
+                                     version 'annotation))
               (sha256
                (base32
                 "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
     (properties
      `((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
     (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
     (propagated-inputs
      `(("r-bsgenome" ,r-bsgenome)))
     (home-page



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